Cluster: CGMR050004_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050004
- CGC Family ID: CGCFAM_01863
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_14554 | k141_14554_3 | 2420 | 4411 | - | 4.A.1.2.11 |
| STP | k141_14554 | k141_14554_4 | 4411 | 5316 | - | SIS |
| CAZyme | k141_14554 | k141_14554_5 | 5316 | 6383 | - | GH170 |
| pfam | k141_14554 | k141_14554_6 | 6555 | 6908 | - | DUF1801 |
| pfam | k141_14554 | k141_14554_7 | 7094 | 8059 | - | Endonuclea_NS_2 |
| TC | k141_14554 | k141_14554_8 | 8849 | 9772 | + | 3.A.1.126.1 |
Gene ID: k141_14554_3
Type: TC
Location: 2420 - 4411 (-)
Type: TC
Location: 2420 - 4411 (-)
Gene ID: k141_14554_4
Type: STP
Location: 4411 - 5316 (-)
Type: STP
Location: 4411 - 5316 (-)
Gene ID: k141_14554_5
Type: CAZyme
Location: 5316 - 6383 (-)
Type: CAZyme
Location: 5316 - 6383 (-)
Gene ID: k141_14554_6
Type: pfam
Location: 6555 - 6908 (-)
Type: pfam
Location: 6555 - 6908 (-)
Gene ID: k141_14554_7
Type: pfam
Location: 7094 - 8059 (-)
Type: pfam
Location: 7094 - 8059 (-)
Gene ID: k141_14554_8
Type: TC
Location: 8849 - 9772 (+)
Type: TC
Location: 8849 - 9772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus parvulus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.