Genome Details
Selected Rep_genome_ID: CGMR007519
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus acidophilus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR007519 | 1,918,344 | 97.55% | 0.42% | China | Asia | CGMR |
| Rep_1024 | 1,941,176 | 98.6039% | 0.974026% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR007519_CGC20 | CGCFAM_00094 | Yes | 5 | 1 | beta-mannan/fructan |
| CGMR007519_CGC6 | CGCFAM_00097 | Yes | 6 | 2 | |
| CGMR007519_CGC23 | CGCFAM_00195 | Yes | 9 | 4 | |
| CGMR007519_CGC18 | CGCFAM_00211 | Yes | 3 | 2 | |
| CGMR007519_CGC13 | CGCFAM_00243 | Yes | 8 | 1 | host glycan |
| CGMR007519_CGC12 | CGCFAM_00276 | Yes | 3 | 1 | |
| CGMR007519_CGC19 | CGCFAM_00336 | Yes | 11 | 3 | alpha-glucan |
| CGMR007519_CGC2 | CGCFAM_00403 | Yes | 13 | 3 | |
| CGMR007519_CGC14 | CGCFAM_00971 | Yes | 6 | 1 | |
| CGMR007519_CGC5 | CGCFAM_01025 | Yes | 10 | 4 | |
| CGMR007519_CGC9 | CGCFAM_01385 | Yes | 5 | 1 | |
| CGMR007519_CGC17 | CGCFAM_01659 | Yes | 4 | 2 | |
| CGMR007519_CGC8 | CGCFAM_01712 | Yes | 3 | 2 | |
| CGMR007519_CGC10 | CGCFAM_01879 | Yes | 4 | 1 | |
| CGMR007519_CGC15 | CGCFAM_02173 | Yes | 12 | 1 | |
| CGMR007519_CGC1 | CGCFAM_04136 | Yes | 3 | 1 | |
| PUL0267_CGMR007519_C0 | CGCFAM_04151 | Yes | 9 | 4 | alpha-glucan |
| CGMR007519_CGC16 | CGCFAM_08180 | Yes | 4 | 2 |
Top CAZyme Families