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Cluster: CGMR007519_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_12169 k141_12169_1 1 1251 - GH1
TF k141_12169 k141_12169_2 1337 2041 - GntR
TC k141_12169 k141_12169_3 2400 2735 + 4.A.3.2.4
TC k141_12169 k141_12169_4 2761 3132 + 4.A.3.2.2
NULL(UNKNOWN) k141_12169 k141_12169_5 3242 3754 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_12169 k141_12169_6 3930 5282 + 4.A.3.2.8
pfam k141_12169 k141_12169_7 5516 5992 + SocA_Panacea
pfam k141_12169 k141_12169_8 6075 6485 - DUF3284
CAZyme k141_12169 k141_12169_9 6589 8070 - GH1
TF k141_12169 k141_12169_10 8080 8802 - GntR
NULL(UNKNOWN) k141_12169 k141_12169_11 8924 9166 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_12169 k141_12169_12 9185 10600 - 4.A.3.2.8
CAZyme k141_12169 k141_12169_13 10600 11982 - GH1
Gene ID: k141_12169_1
Type: CAZyme
Location: 1 - 1251 (-)
Gene ID: k141_12169_2
Type: TF
Location: 1337 - 2041 (-)
Gene ID: k141_12169_3
Type: TC
Location: 2400 - 2735 (+)
Gene ID: k141_12169_4
Type: TC
Location: 2761 - 3132 (+)
Gene ID: k141_12169_5
Type:
Location: 3242 - 3754 (+)
Gene ID: k141_12169_6
Type: TC
Location: 3930 - 5282 (+)
Gene ID: k141_12169_7
Type: pfam
Location: 5516 - 5992 (+)
Gene ID: k141_12169_8
Type: pfam
Location: 6075 - 6485 (-)
Gene ID: k141_12169_9
Type: CAZyme
Location: 6589 - 8070 (-)
Gene ID: k141_12169_10
Type: TF
Location: 8080 - 8802 (-)
Gene ID: k141_12169_11
Type:
Location: 8924 - 9166 (-)
Gene ID: k141_12169_12
Type: TC
Location: 9185 - 10600 (-)
Gene ID: k141_12169_13
Type: CAZyme
Location: 10600 - 11982 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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