Genome Details
Selected Rep_genome_ID: AG093_52
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG093_52 | 2,987,497 | 99.3% | 0% | NA | Africa | H3AfricaPhase2 |
| Rep_16 | 2,285,525 | 97.7622% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| AG093_52_CGC23 | CGCFAM_00002 | Yes | 4 | 2 | |
| AG093_52_CGC16 | CGCFAM_00015 | Yes | 3 | 1 | |
| AG093_52_CGC17 | CGCFAM_00032 | Yes | 3 | 1 | |
| AG093_52_CGC5 | CGCFAM_00207 | Yes | 4 | 1 | |
| AG093_52_CGC11 | CGCFAM_01006 | Yes | 3 | 1 | |
| AG093_52_CGC3 | CGCFAM_01145 | Yes | 4 | 1 | |
| AG093_52_CGC10 | CGCFAM_01977 | Yes | 3 | 2 | |
| AG093_52_CGC20 | CGCFAM_01978 | Yes | 3 | 1 | |
| AG093_52_CGC18 | CGCFAM_03199 | Yes | 3 | 1 | |
| AG093_52_CGC1 | CGCFAM_04574 | Yes | 5 | 1 | |
| AG093_52_CGC12 | CGCFAM_04576 | Yes | 4 | 1 | |
| AG093_52_CGC21 | CGCFAM_04577 | Yes | 6 | 3 |
Top CAZyme Families