Cluster: HRGMv2_4553_CGC27
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_02661
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4553_54 | HRGMv2_4553_54_1 | 117 | 3101 | + | CBM22 | CBM6 | CE1 | GH43_29 |
| TF | HRGMv2_4553_54 | HRGMv2_4553_54_2 | 3312 | 4064 | + | HTH_AraC | HTH_AraC |
| TF | HRGMv2_4553_54 | HRGMv2_4553_54_3 | 4262 | 5053 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4553_54 | HRGMv2_4553_54_4 | 5130 | 7916 | + | GH16_21 | GH16_21 | GH16_21 |
| TF | HRGMv2_4553_54 | HRGMv2_4553_54_5 | 8028 | 8891 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_4553_54 | HRGMv2_4553_54_6 | 9116 | 10006 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4553_54 | HRGMv2_4553_54_7 | 10079 | 12157 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_4553_54 | HRGMv2_4553_54_8 | 12177 | 13490 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4553_54 | HRGMv2_4553_54_9 | 13546 | 15000 | + | SBP_bac_8 |
| TC | HRGMv2_4553_54 | HRGMv2_4553_54_10 | 15075 | 16064 | + | 3.A.1.1.34 |
| TC | HRGMv2_4553_54 | HRGMv2_4553_54_11 | 16052 | 16906 | + | 3.A.1.1.48 |
Gene ID: HRGMv2_4553_54_1
Type: CAZyme
Location: 117 - 3101 (+)
Type: CAZyme
Location: 117 - 3101 (+)
Gene ID: HRGMv2_4553_54_2
Type: TF
Location: 3312 - 4064 (+)
Type: TF
Location: 3312 - 4064 (+)
Gene ID: HRGMv2_4553_54_3
Type: TF
Location: 4262 - 5053 (+)
Type: TF
Location: 4262 - 5053 (+)
Gene ID: HRGMv2_4553_54_4
Type: CAZyme
Location: 5130 - 7916 (+)
Type: CAZyme
Location: 5130 - 7916 (+)
Gene ID: HRGMv2_4553_54_5
Type: TF
Location: 8028 - 8891 (-)
Type: TF
Location: 8028 - 8891 (-)
Gene ID: HRGMv2_4553_54_6
Type:
Location: 9116 - 10006 (+)
Type:
Location: 9116 - 10006 (+)
Gene ID: HRGMv2_4553_54_7
Type: CAZyme
Location: 10079 - 12157 (+)
Type: CAZyme
Location: 10079 - 12157 (+)
Gene ID: HRGMv2_4553_54_8
Type:
Location: 12177 - 13490 (+)
Type:
Location: 12177 - 13490 (+)
Gene ID: HRGMv2_4553_54_9
Type: pfam
Location: 13546 - 15000 (+)
Type: pfam
Location: 13546 - 15000 (+)
Gene ID: HRGMv2_4553_54_10
Type: TC
Location: 15075 - 16064 (+)
Type: TC
Location: 15075 - 16064 (+)
Gene ID: HRGMv2_4553_54_11
Type: TC
Location: 16052 - 16906 (+)
Type: TC
Location: 16052 - 16906 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.