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Cluster: HRGMv2_4054_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4054_20 HRGMv2_4054_20_10 12417 15176 - GH110
CAZyme HRGMv2_4054_20 HRGMv2_4054_20_11 15177 17144 - GH110
NULL(UNKNOWN) HRGMv2_4054_20 HRGMv2_4054_20_12 17182 18966 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4054_20 HRGMv2_4054_20_13 18981 19862 - 3.A.1.1.10
TC HRGMv2_4054_20 HRGMv2_4054_20_14 19872 20855 - 3.A.1.1.10
TF HRGMv2_4054_20 HRGMv2_4054_20_15 21018 21887 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4054_20 HRGMv2_4054_20_16 22044 24578 - GH116
NULL(UNKNOWN) HRGMv2_4054_20 HRGMv2_4054_20_17 24898 26109 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4054_20 HRGMv2_4054_20_18 26159 27586 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4054_20 HRGMv2_4054_20_19 27606 28508 - 3.A.1.1.8
Gene ID: HRGMv2_4054_20_10
Type: CAZyme
Location: 12417 - 15176 (-)
Gene ID: HRGMv2_4054_20_11
Type: CAZyme
Location: 15177 - 17144 (-)
Gene ID: HRGMv2_4054_20_12
Type:
Location: 17182 - 18966 (-)
Gene ID: HRGMv2_4054_20_13
Type: TC
Location: 18981 - 19862 (-)
Gene ID: HRGMv2_4054_20_14
Type: TC
Location: 19872 - 20855 (-)
Gene ID: HRGMv2_4054_20_15
Type: TF
Location: 21018 - 21887 (+)
Gene ID: HRGMv2_4054_20_16
Type: CAZyme
Location: 22044 - 24578 (-)
Gene ID: HRGMv2_4054_20_17
Type:
Location: 24898 - 26109 (-)
Gene ID: HRGMv2_4054_20_18
Type:
Location: 26159 - 27586 (-)
Gene ID: HRGMv2_4054_20_19
Type: TC
Location: 27606 - 28508 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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