Cluster: HRGMv2_3868_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3868
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3868_1 | HRGMv2_3868_1_32 | 44388 | 45485 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3868_1 | HRGMv2_3868_1_33 | 45482 | 45586 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3868_1 | HRGMv2_3868_1_34 | 45716 | 46204 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_3868_1 | HRGMv2_3868_1_35 | 46251 | 47306 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3868_1 | HRGMv2_3868_1_36 | 47303 | 48577 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3868_1 | HRGMv2_3868_1_37 | 48574 | 49782 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3868_1 | HRGMv2_3868_1_38 | 49764 | 50471 | + | GT26 |
| pfam | HRGMv2_3868_1 | HRGMv2_3868_1_39 | 50484 | 51479 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| pfam | HRGMv2_3868_1 | HRGMv2_3868_1_40 | 51737 | 52537 | + | Poly_export | SLBB | SLBB_2 |
| TC | HRGMv2_3868_1 | HRGMv2_3868_1_41 | 52566 | 54881 | + | 8.A.3.2.2 |
Gene ID: HRGMv2_3868_1_32
Type: CAZyme
Location: 44388 - 45485 (+)
Type: CAZyme
Location: 44388 - 45485 (+)
Gene ID: HRGMv2_3868_1_33
Type:
Location: 45482 - 45586 (+)
Type:
Location: 45482 - 45586 (+)
Gene ID: HRGMv2_3868_1_34
Type: pfam
Location: 45716 - 46204 (+)
Type: pfam
Location: 45716 - 46204 (+)
Gene ID: HRGMv2_3868_1_35
Type: CAZyme
Location: 46251 - 47306 (+)
Type: CAZyme
Location: 46251 - 47306 (+)
Gene ID: HRGMv2_3868_1_36
Type:
Location: 47303 - 48577 (+)
Type:
Location: 47303 - 48577 (+)
Gene ID: HRGMv2_3868_1_37
Type:
Location: 48574 - 49782 (+)
Type:
Location: 48574 - 49782 (+)
Gene ID: HRGMv2_3868_1_38
Type: CAZyme
Location: 49764 - 50471 (+)
Type: CAZyme
Location: 49764 - 50471 (+)
Gene ID: HRGMv2_3868_1_39
Type: pfam
Location: 50484 - 51479 (+)
Type: pfam
Location: 50484 - 51479 (+)
Gene ID: HRGMv2_3868_1_40
Type: pfam
Location: 51737 - 52537 (+)
Type: pfam
Location: 51737 - 52537 (+)
Gene ID: HRGMv2_3868_1_41
Type: TC
Location: 52566 - 54881 (+)
Type: TC
Location: 52566 - 54881 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.