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Cluster: HRGMv2_2618_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2618_17 HRGMv2_2618_17_4 4401 5570 + GT4
NULL(UNKNOWN) HRGMv2_2618_17 HRGMv2_2618_17_5 5567 6628 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2618_17 HRGMv2_2618_17_6 6645 7667 + GT2
NULL(UNKNOWN) HRGMv2_2618_17 HRGMv2_2618_17_7 7664 9208 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2618_17 HRGMv2_2618_17_8 9205 10221 + PS_pyruv_trans
CAZyme HRGMv2_2618_17 HRGMv2_2618_17_9 10233 11192 + GT2
pfam HRGMv2_2618_17 HRGMv2_2618_17_10 11345 12796 + SLH
TC HRGMv2_2618_17 HRGMv2_2618_17_11 12880 14358 + 9.B.18.1.3
CAZyme HRGMv2_2618_17 HRGMv2_2618_17_12 14324 15160 + GT2
Gene ID: HRGMv2_2618_17_4
Type: CAZyme
Location: 4401 - 5570 (+)
Gene ID: HRGMv2_2618_17_5
Type:
Location: 5567 - 6628 (+)
Gene ID: HRGMv2_2618_17_6
Type: CAZyme
Location: 6645 - 7667 (+)
Gene ID: HRGMv2_2618_17_7
Type:
Location: 7664 - 9208 (+)
Gene ID: HRGMv2_2618_17_8
Type: pfam
Location: 9205 - 10221 (+)
Gene ID: HRGMv2_2618_17_9
Type: CAZyme
Location: 10233 - 11192 (+)
Gene ID: HRGMv2_2618_17_10
Type: pfam
Location: 11345 - 12796 (+)
Gene ID: HRGMv2_2618_17_11
Type: TC
Location: 12880 - 14358 (+)
Gene ID: HRGMv2_2618_17_12
Type: CAZyme
Location: 14324 - 15160 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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