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Cluster: HRGMv2_2087_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_4 HRGMv2_2087_4_81 83920 85620 + 1.B.52.2.1
CAZyme HRGMv2_2087_4 HRGMv2_2087_4_82 85764 88178 + GH94
CAZyme HRGMv2_2087_4 HRGMv2_2087_4_83 88191 90887 + GH94
TF HRGMv2_2087_4 HRGMv2_2087_4_84 90895 91632 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_2087_4 HRGMv2_2087_4_85 91769 93181 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2087_4 HRGMv2_2087_4_86 93272 94186 + 3.A.1.1.4
TC HRGMv2_2087_4 HRGMv2_2087_4_87 94192 95055 + 3.A.1.1.36
CAZyme HRGMv2_2087_4 HRGMv2_2087_4_88 95080 98592 + CBM4 | CBM4 | CBM4 | GH16_3
NULL(UNKNOWN) HRGMv2_2087_4 HRGMv2_2087_4_89 98737 100077 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2087_4 HRGMv2_2087_4_90 100104 101834 + 1.B.52.2.2
TC HRGMv2_2087_4 HRGMv2_2087_4_91 101858 103693 + 9.B.34.1.3
Gene ID: HRGMv2_2087_4_81
Type: TC
Location: 83920 - 85620 (+)
Gene ID: HRGMv2_2087_4_82
Type: CAZyme
Location: 85764 - 88178 (+)
Gene ID: HRGMv2_2087_4_83
Type: CAZyme
Location: 88191 - 90887 (+)
Gene ID: HRGMv2_2087_4_84
Type: TF
Location: 90895 - 91632 (-)
Gene ID: HRGMv2_2087_4_85
Type:
Location: 91769 - 93181 (+)
Gene ID: HRGMv2_2087_4_86
Type: TC
Location: 93272 - 94186 (+)
Gene ID: HRGMv2_2087_4_87
Type: TC
Location: 94192 - 95055 (+)
Gene ID: HRGMv2_2087_4_88
Type: CAZyme
Location: 95080 - 98592 (+)
Gene ID: HRGMv2_2087_4_89
Type:
Location: 98737 - 100077 (+)
Gene ID: HRGMv2_2087_4_90
Type: TC
Location: 100104 - 101834 (+)
Gene ID: HRGMv2_2087_4_91
Type: TC
Location: 101858 - 103693 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2087_4_85 vegetarian > vegan 1.49822 0.00229

🧭 Explore Read Mapping of CGC

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