Cluster: HRGMv2_0556_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0556
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_1066 | 1209219 | 1210610 | + | 2.A.23.1.4 |
| STP | HRGMv2_0556_1 | HRGMv2_0556_1_1067 | 1210694 | 1211299 | - | Rhodanese |
| CAZyme | HRGMv2_0556_1 | HRGMv2_0556_1_1068 | 1211440 | 1213320 | - | GT11 |
| NULL(UNKNOWN) | HRGMv2_0556_1 | HRGMv2_0556_1_1069 | 1213478 | 1214602 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0556_1 | HRGMv2_0556_1_1070 | 1214683 | 1215681 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0556_1 | HRGMv2_0556_1_1071 | 1215714 | 1216748 | - | GT11 |
Gene ID: HRGMv2_0556_1_1066
Type: TC
Location: 1209219 - 1210610 (+)
Type: TC
Location: 1209219 - 1210610 (+)
Gene ID: HRGMv2_0556_1_1067
Type: STP
Location: 1210694 - 1211299 (-)
Type: STP
Location: 1210694 - 1211299 (-)
Gene ID: HRGMv2_0556_1_1068
Type: CAZyme
Location: 1211440 - 1213320 (-)
Type: CAZyme
Location: 1211440 - 1213320 (-)
Gene ID: HRGMv2_0556_1_1069
Type:
Location: 1213478 - 1214602 (+)
Type:
Location: 1213478 - 1214602 (+)
Gene ID: HRGMv2_0556_1_1070
Type:
Location: 1214683 - 1215681 (+)
Type:
Location: 1214683 - 1215681 (+)
Gene ID: HRGMv2_0556_1_1071
Type: CAZyme
Location: 1215714 - 1216748 (-)
Type: CAZyme
Location: 1215714 - 1216748 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.