Cluster: HRGMv2_0217_CGC34
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_02869
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0217_144 | HRGMv2_0217_144_16 | 20289 | 21905 | - | 8.A.46.1.1 |
| TC | HRGMv2_0217_144 | HRGMv2_0217_144_17 | 21918 | 24617 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | HRGMv2_0217_144 | HRGMv2_0217_144_18 | 24990 | 26039 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0217_144 | HRGMv2_0217_144_19 | 26069 | 27619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0217_144 | HRGMv2_0217_144_20 | 27635 | 28690 | + | 9.B.183.1.5 |
| pfam | HRGMv2_0217_144 | HRGMv2_0217_144_21 | 28704 | 29855 | + | Glyco_tran_WbsX |
| CAZyme | HRGMv2_0217_144 | HRGMv2_0217_144_22 | 29857 | 30672 | + | GT23 |
| CAZyme | HRGMv2_0217_144 | HRGMv2_0217_144_23 | 30680 | 31501 | + | GT2 |
| CAZyme | HRGMv2_0217_144 | HRGMv2_0217_144_24 | 31568 | 32377 | + | GT2 |
| TC | HRGMv2_0217_144 | HRGMv2_0217_144_25 | 32434 | 33156 | + | 9.B.18.1.3 |
| pfam | HRGMv2_0217_144 | HRGMv2_0217_144_26 | 33254 | 34483 | - | OEP | OEP |
| TC | HRGMv2_0217_144 | HRGMv2_0217_144_27 | 34561 | 37752 | - | 2.A.6.1.5 |
Gene ID: HRGMv2_0217_144_16
Type: TC
Location: 20289 - 21905 (-)
Type: TC
Location: 20289 - 21905 (-)
Gene ID: HRGMv2_0217_144_17
Type: TC
Location: 21918 - 24617 (-)
Type: TC
Location: 21918 - 24617 (-)
Gene ID: HRGMv2_0217_144_18
Type:
Location: 24990 - 26039 (+)
Type:
Location: 24990 - 26039 (+)
Gene ID: HRGMv2_0217_144_19
Type:
Location: 26069 - 27619 (+)
Type:
Location: 26069 - 27619 (+)
Gene ID: HRGMv2_0217_144_20
Type: TC
Location: 27635 - 28690 (+)
Type: TC
Location: 27635 - 28690 (+)
Gene ID: HRGMv2_0217_144_21
Type: pfam
Location: 28704 - 29855 (+)
Type: pfam
Location: 28704 - 29855 (+)
Gene ID: HRGMv2_0217_144_22
Type: CAZyme
Location: 29857 - 30672 (+)
Type: CAZyme
Location: 29857 - 30672 (+)
Gene ID: HRGMv2_0217_144_23
Type: CAZyme
Location: 30680 - 31501 (+)
Type: CAZyme
Location: 30680 - 31501 (+)
Gene ID: HRGMv2_0217_144_24
Type: CAZyme
Location: 31568 - 32377 (+)
Type: CAZyme
Location: 31568 - 32377 (+)
Gene ID: HRGMv2_0217_144_25
Type: TC
Location: 32434 - 33156 (+)
Type: TC
Location: 32434 - 33156 (+)
Gene ID: HRGMv2_0217_144_26
Type: pfam
Location: 33254 - 34483 (-)
Type: pfam
Location: 33254 - 34483 (-)
Gene ID: HRGMv2_0217_144_27
Type: TC
Location: 34561 - 37752 (-)
Type: TC
Location: 34561 - 37752 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0217_144_16 | vegetarian > omnivore | 1.40245 | 0.01427 |
| HRGMv2_0217_144_16 | vegetarian > vegan | 1.39641 | 0.01274 |
| HRGMv2_0217_144_17 | vegetarian > omnivore | 1.65730 | 0.01427 |
| HRGMv2_0217_144_17 | vegetarian > vegan | 1.65955 | 0.01274 |