y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00047135m |
Family | AA2 |
Protein Properties | Length: 348 Molecular Weight: 37348 Isoelectric Point: 10.3914 |
Chromosome | Chromosome/Scaffold: 013126 Start: 1062 End: 3991 |
Description | Peroxidase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 78 | 339 | 0 |
RDFPAAGPAVLRLFHHDCFVEGCDASILIAPTPTASASSKVERDMEENKNLAQEAFDTVELAKAAVESRCPRVVSCADVLALAARDYVQQAGGPFYSVKK GRKDSKVSLAGKVRGSLPRANSTVDELLRVFAGKGLGAADLVALSGAHTVGFAHCVHVLGRIYDFRGTRRPDPLMDARLVKALRMSCPSSGGSARVVVPF DVSTPFQFDHAYYANLQARLGLLGSDQALFLDPRTRPLVQELAGNRTRFFQAFVASMDRMGA |
Full Sequence |
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Protein Sequence Length: 348 Download |
MGSSGAGIRL RRRVSLLLLL LVVGGTTARA REAQPLPEAA AAGTRRAPER HGLSLDFYAK 60 TCPAVDQIVA NVTAARYRDF PAAGPAVLRL FHHDCFVEGC DASILIAPTP TASASSKVER 120 DMEENKNLAQ EAFDTVELAK AAVESRCPRV VSCADVLALA ARDYVQQAGG PFYSVKKGRK 180 DSKVSLAGKV RGSLPRANST VDELLRVFAG KGLGAADLVA LSGAHTVGFA HCVHVLGRIY 240 DFRGTRRPDP LMDARLVKAL RMSCPSSGGS ARVVVPFDVS TPFQFDHAYY ANLQARLGLL 300 GSDQALFLDP RTRPLVQELA GNRTRFFQAF VASMDRMGAI RIKKGKKG 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00141 | peroxidase | 2.0e-5 | 292 | 322 | 31 | + Peroxidase. | ||
cd00314 | plant_peroxidase_like | 5.0e-24 | 67 | 338 | 302 | + Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. | ||
pfam00141 | peroxidase | 4.0e-51 | 69 | 227 | 159 | + Peroxidase. | ||
PLN03030 | PLN03030 | 8.0e-62 | 51 | 348 | 303 | + cationic peroxidase; Provisional | ||
cd00693 | secretory_peroxidase | 2.0e-137 | 52 | 348 | 297 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. |
Gene Ontology | |
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GO Term | Description |
GO:0004601 | peroxidase activity |
GO:0006979 | response to oxidative stress |
GO:0020037 | heme binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC71236.1 | 0 | 44 | 348 | 58 | 363 | hypothetical protein OsI_03192 [Oryza sativa Indica Group] |
GenBank | EEE55147.1 | 0 | 44 | 348 | 58 | 363 | hypothetical protein OsJ_02943 [Oryza sativa Japonica Group] |
RefSeq | XP_002305096.1 | 0 | 16 | 347 | 15 | 333 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002456109.1 | 0 | 27 | 348 | 31 | 357 | hypothetical protein SORBIDRAFT_03g030630 [Sorghum bicolor] |
RefSeq | XP_002522523.1 | 0 | 18 | 347 | 32 | 352 | Peroxidase 19 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gwo_A | 0 | 53 | 348 | 3 | 296 | A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln |
PDB | 1gx2_B | 0 | 53 | 348 | 3 | 296 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 1gx2_A | 0 | 53 | 348 | 3 | 296 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 1hch_A | 0 | 53 | 348 | 2 | 295 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 1atj_F | 0 | 53 | 348 | 2 | 295 | A Chain A, Recombinant Horseradish Peroxidase C1a |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
betanidin degradation | RXN-8635 | EC-1.11.1.7 | peroxidase |