Genome Details
Selected Rep_genome_ID: HRGMv2_4338
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4338 | 2,696,444 | 94.65% | 1.543% | Cameroon | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4338_CGC7 | CGCFAM_00012 | Yes | 4 | 2 | host glycan/beta-glucan |
| HRGMv2_4338_CGC5 | CGCFAM_00020 | Yes | 5 | 1 | host glycan/beta-glucan |
| HRGMv2_4338_CGC17 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_4338_CGC8 | CGCFAM_00094 | Yes | 6 | 2 | beta-mannan/fructan |
| HRGMv2_4338_CGC21 | CGCFAM_00141 | Yes | 3 | 1 | |
| HRGMv2_4338_CGC15 | CGCFAM_00308 | Yes | 3 | 2 | |
| HRGMv2_4338_CGC14 | CGCFAM_00869 | Yes | 3 | 2 | |
| HRGMv2_4338_CGC19 | CGCFAM_02580 | Yes | 4 | 1 | |
| HRGMv2_4338_CGC23 | CGCFAM_02916 | Yes | 6 | 3 | |
| HRGMv2_4338_CGC13 | CGCFAM_03526 | Yes | 4 | 1 | |
| HRGMv2_4338_CGC18 | CGCFAM_05732 | Yes | 3 | 1 | |
| HRGMv2_4338_CGC3 | CGCFAM_09044 | Yes | 3 | 1 |
Top CAZyme Families