Cluster: HRGMv2_4338_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: beta-mannan/fructan
- Genome ID: HRGMv2_4338
- CGC Family ID: CGCFAM_00094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4338_41 | HRGMv2_4338_41_1 | 59 | 2047 | - | 4.A.1.2.12 |
| CAZyme | HRGMv2_4338_41 | HRGMv2_4338_41_2 | 2262 | 3731 | + | GH32 |
| TF | HRGMv2_4338_41 | HRGMv2_4338_41_3 | 3741 | 4730 | + | LacI |
| pfam | HRGMv2_4338_41 | HRGMv2_4338_41_4 | 4818 | 5732 | - | ADH_zinc_N | ADH_N |
| TC | HRGMv2_4338_41 | HRGMv2_4338_41_5 | 5840 | 7255 | - | 2.A.35.1.3 |
| CAZyme | HRGMv2_4338_41 | HRGMv2_4338_41_6 | 7764 | 9449 | + | GH13_31 |
Gene ID: HRGMv2_4338_41_1
Type: TC
Location: 59 - 2047 (-)
Type: TC
Location: 59 - 2047 (-)
Gene ID: HRGMv2_4338_41_2
Type: CAZyme
Location: 2262 - 3731 (+)
Type: CAZyme
Location: 2262 - 3731 (+)
Gene ID: HRGMv2_4338_41_3
Type: TF
Location: 3741 - 4730 (+)
Type: TF
Location: 3741 - 4730 (+)
Gene ID: HRGMv2_4338_41_4
Type: pfam
Location: 4818 - 5732 (-)
Type: pfam
Location: 4818 - 5732 (-)
Gene ID: HRGMv2_4338_41_5
Type: TC
Location: 5840 - 7255 (-)
Type: TC
Location: 5840 - 7255 (-)
Gene ID: HRGMv2_4338_41_6
Type: CAZyme
Location: 7764 - 9449 (+)
Type: CAZyme
Location: 7764 - 9449 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.