Cluster: HRGMv2_4338_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4338
- CGC Family ID: CGCFAM_02916
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4338_193 | HRGMv2_4338_193_2 | 122 | 856 | - | GT2 |
| TF | HRGMv2_4338_193 | HRGMv2_4338_193_3 | 948 | 1655 | - | GntR |
| TC | HRGMv2_4338_193 | HRGMv2_4338_193_4 | 1839 | 2153 | + | 4.A.3.2.4 |
| TC | HRGMv2_4338_193 | HRGMv2_4338_193_5 | 2267 | 2617 | + | 4.A.3.2.4 |
| CAZyme | HRGMv2_4338_193 | HRGMv2_4338_193_6 | 2762 | 4201 | + | GH1 |
| CAZyme | HRGMv2_4338_193 | HRGMv2_4338_193_7 | 4219 | 5664 | + | GH1 |
Gene ID: HRGMv2_4338_193_2
Type: CAZyme
Location: 122 - 856 (-)
Type: CAZyme
Location: 122 - 856 (-)
Gene ID: HRGMv2_4338_193_3
Type: TF
Location: 948 - 1655 (-)
Type: TF
Location: 948 - 1655 (-)
Gene ID: HRGMv2_4338_193_4
Type: TC
Location: 1839 - 2153 (+)
Type: TC
Location: 1839 - 2153 (+)
Gene ID: HRGMv2_4338_193_5
Type: TC
Location: 2267 - 2617 (+)
Type: TC
Location: 2267 - 2617 (+)
Gene ID: HRGMv2_4338_193_6
Type: CAZyme
Location: 2762 - 4201 (+)
Type: CAZyme
Location: 2762 - 4201 (+)
Gene ID: HRGMv2_4338_193_7
Type: CAZyme
Location: 4219 - 5664 (+)
Type: CAZyme
Location: 4219 - 5664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.