Genome Details
Selected Rep_genome_ID: HRGMv2_1474
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_1474 | 1,982,675 | 96.94% | 0.896% | NA | Europe | HRGM |
| MGYG000001223 | 2,100,982 | 98.39% | 2.42% | Austria | Europe | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1474_CGC20 | CGCFAM_00013 | Yes | 5 | 1 | |
| HRGMv2_1474_CGC3 | CGCFAM_00014 | Yes | 4 | 1 | host glycan |
| HRGMv2_1474_CGC16 | CGCFAM_00286 | Yes | 9 | 2 | |
| HRGMv2_1474_CGC5 | CGCFAM_00879 | Yes | 9 | 1 | |
| HRGMv2_1474_CGC17 | CGCFAM_00880 | Yes | 5 | 1 |
Top CAZyme Families