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Cluster: HRGMv2_1474_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1474_32 HRGMv2_1474_32_26 35025 35954 - 9.A.8.1.10
TC HRGMv2_1474_32 HRGMv2_1474_32_27 35951 37351 - 9.A.8.1.6
TC HRGMv2_1474_32 HRGMv2_1474_32_28 37475 37696 - 9.A.8.1.1
STP HRGMv2_1474_32 HRGMv2_1474_32_29 37736 37978 - FeoA
STP HRGMv2_1474_32 HRGMv2_1474_32_30 38167 38415 - PTS-HPr
TC HRGMv2_1474_32 HRGMv2_1474_32_31 38836 40299 - 2.A.3.7.4
NULL(UNKNOWN) HRGMv2_1474_32 HRGMv2_1474_32_32 40453 40908 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1474_32 HRGMv2_1474_32_33 40912 42030 - Bgal_small_N
CAZyme HRGMv2_1474_32 HRGMv2_1474_32_34 41982 43919 - GH2
Gene ID: HRGMv2_1474_32_26
Type: TC
Location: 35025 - 35954 (-)
Gene ID: HRGMv2_1474_32_27
Type: TC
Location: 35951 - 37351 (-)
Gene ID: HRGMv2_1474_32_28
Type: TC
Location: 37475 - 37696 (-)
Gene ID: HRGMv2_1474_32_29
Type: STP
Location: 37736 - 37978 (-)
Gene ID: HRGMv2_1474_32_30
Type: STP
Location: 38167 - 38415 (-)
Gene ID: HRGMv2_1474_32_31
Type: TC
Location: 38836 - 40299 (-)
Gene ID: HRGMv2_1474_32_32
Type:
Location: 40453 - 40908 (-)
Gene ID: HRGMv2_1474_32_33
Type: pfam
Location: 40912 - 42030 (-)
Gene ID: HRGMv2_1474_32_34
Type: CAZyme
Location: 41982 - 43919 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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