Genome Details
Selected Rep_genome_ID: CGMR092402
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus pentosaceus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR092402 | 1,672,288 | 99.38% | 0% | China | Asia | CGMR |
| Rep_1051 | 1,773,958 | 99.3827% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR092402_CGC20 | CGCFAM_00102 | Yes | 7 | 1 | |
| CGMR092402_CGC13 | CGCFAM_00255 | Yes | 7 | 2 | |
| CGMR092402_CGC15 | CGCFAM_01680 | Yes | 15 | 4 | |
| CGMR092402_CGC17 | CGCFAM_01819 | Yes | 3 | 1 | galactan |
| CGMR092402_CGC5 | CGCFAM_05689 | Yes | 11 | 2 | |
| CGMR092402_CGC14 | CGCFAM_05690 | Yes | 7 | 1 | |
| CGMR092402_CGC21 | CGCFAM_07262 | Yes | 9 | 1 | |
| CGMR092402_CGC2 | CGCFAM_08654 | Yes | 4 | 1 | |
| CGMR092402_CGC8 | CGCFAM_08799 | Yes | 4 | 1 | |
| CGMR092402_CGC1 | CGCFAM_08889 | Yes | 4 | 1 | |
| CGMR092402_CGC18 | CGCFAM_09130 | Yes | 6 | 1 |
Top CAZyme Families