Cluster: CGMR092402_CGC15
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR092402
- CGC Family ID: CGCFAM_01680
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_11141 | k141_11141_35 | 33107 | 34522 | - | 2.A.66.2.16 |
| STP | k141_11141 | k141_11141_36 | 34526 | 35647 | - | Pyr_redox |
| CAZyme | k141_11141 | k141_11141_37 | 35672 | 36568 | - | GT2 |
| pfam | k141_11141 | k141_11141_38 | 37247 | 38338 | - | EpsG |
| CAZyme | k141_11141 | k141_11141_39 | 38387 | 39358 | - | GT2 |
| CAZyme | k141_11141 | k141_11141_40 | 39408 | 40517 | - | GT4 |
| pfam | k141_11141 | k141_11141_41 | 40519 | 41676 | - | Glyphos_transf |
| CAZyme | k141_11141 | k141_11141_42 | 41686 | 42465 | - | GT111 |
| TC | k141_11141 | k141_11141_43 | 42468 | 43103 | - | 9.B.18.1.2 |
| pfam | k141_11141 | k141_11141_44 | 43115 | 43906 | - | CpsB_CapC |
| TC | k141_11141 | k141_11141_45 | 43906 | 44637 | - | 8.A.3.2.1 |
| TC | k141_11141 | k141_11141_46 | 44647 | 45432 | - | 8.A.3.2.4 |
| peptidase | k141_11141 | k141_11141_47 | 45448 | 46575 | - | S12.UNW |
| peptidase | k141_11141 | k141_11141_48 | 46748 | 47449 | - | M10.UPA |
| TC | k141_11141 | k141_11141_49 | 47539 | 49293 | - | 2.A.16.2.2 |
Gene ID: k141_11141_35
Type: TC
Location: 33107 - 34522 (-)
Type: TC
Location: 33107 - 34522 (-)
Gene ID: k141_11141_36
Type: STP
Location: 34526 - 35647 (-)
Type: STP
Location: 34526 - 35647 (-)
Gene ID: k141_11141_37
Type: CAZyme
Location: 35672 - 36568 (-)
Type: CAZyme
Location: 35672 - 36568 (-)
Gene ID: k141_11141_38
Type: pfam
Location: 37247 - 38338 (-)
Type: pfam
Location: 37247 - 38338 (-)
Gene ID: k141_11141_39
Type: CAZyme
Location: 38387 - 39358 (-)
Type: CAZyme
Location: 38387 - 39358 (-)
Gene ID: k141_11141_40
Type: CAZyme
Location: 39408 - 40517 (-)
Type: CAZyme
Location: 39408 - 40517 (-)
Gene ID: k141_11141_41
Type: pfam
Location: 40519 - 41676 (-)
Type: pfam
Location: 40519 - 41676 (-)
Gene ID: k141_11141_42
Type: CAZyme
Location: 41686 - 42465 (-)
Type: CAZyme
Location: 41686 - 42465 (-)
Gene ID: k141_11141_43
Type: TC
Location: 42468 - 43103 (-)
Type: TC
Location: 42468 - 43103 (-)
Gene ID: k141_11141_44
Type: pfam
Location: 43115 - 43906 (-)
Type: pfam
Location: 43115 - 43906 (-)
Gene ID: k141_11141_45
Type: TC
Location: 43906 - 44637 (-)
Type: TC
Location: 43906 - 44637 (-)
Gene ID: k141_11141_46
Type: TC
Location: 44647 - 45432 (-)
Type: TC
Location: 44647 - 45432 (-)
Gene ID: k141_11141_47
Type: peptidase
Location: 45448 - 46575 (-)
Type: peptidase
Location: 45448 - 46575 (-)
Gene ID: k141_11141_48
Type: peptidase
Location: 46748 - 47449 (-)
Type: peptidase
Location: 46748 - 47449 (-)
Gene ID: k141_11141_49
Type: TC
Location: 47539 - 49293 (-)
Type: TC
Location: 47539 - 49293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus pentosaceus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.