Cluster: CGMR092402_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR092402
- CGC Family ID: CGCFAM_00255
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_11141 | k141_11141_2 | 1450 | 2466 | - | GT4 |
| CAZyme | k141_11141 | k141_11141_3 | 2517 | 3692 | - | GT4 |
| peptidase | k141_11141 | k141_11141_4 | 3782 | 4555 | - | S33.UNW |
| TC | k141_11141 | k141_11141_5 | 4628 | 6352 | - | 8.A.7.1.1 |
| TC | k141_11141 | k141_11141_6 | 6352 | 6618 | - | 8.A.8.1.4 |
| NULL(UNKNOWN) | k141_11141 | k141_11141_7 | 6764 | 6952 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_11141 | k141_11141_8 | 7157 | 9376 | + | 3.A.9.1.2 |
Gene ID: k141_11141_2
Type: CAZyme
Location: 1450 - 2466 (-)
Type: CAZyme
Location: 1450 - 2466 (-)
Gene ID: k141_11141_3
Type: CAZyme
Location: 2517 - 3692 (-)
Type: CAZyme
Location: 2517 - 3692 (-)
Gene ID: k141_11141_4
Type: peptidase
Location: 3782 - 4555 (-)
Type: peptidase
Location: 3782 - 4555 (-)
Gene ID: k141_11141_5
Type: TC
Location: 4628 - 6352 (-)
Type: TC
Location: 4628 - 6352 (-)
Gene ID: k141_11141_6
Type: TC
Location: 6352 - 6618 (-)
Type: TC
Location: 6352 - 6618 (-)
Gene ID: k141_11141_7
Type:
Location: 6764 - 6952 (-)
Type:
Location: 6764 - 6952 (-)
Gene ID: k141_11141_8
Type: TC
Location: 7157 - 9376 (+)
Type: TC
Location: 7157 - 9376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus pentosaceus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.