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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC72

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4305041_bin.1_k119_6601 VatanenT_2016_SRR4305041_bin.1_k119_6601_77 113512 116289 - 1.B.14.6.1
pfam VatanenT_2016_SRR4305041_bin.1_k119_6601 VatanenT_2016_SRR4305041_bin.1_k119_6601_78 116333 118171 - SusD_RagB | SusD-like_3
TC VatanenT_2016_SRR4305041_bin.1_k119_6601 VatanenT_2016_SRR4305041_bin.1_k119_6601_79 118191 121370 - 1.B.14.6.1
NULL(UNKNOWN) VatanenT_2016_SRR4305041_bin.1_k119_6601 VatanenT_2016_SRR4305041_bin.1_k119_6601_80 121820 122119 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_6601 VatanenT_2016_SRR4305041_bin.1_k119_6601_81 122271 123629 + GH29
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_77
Type: TC
Location: 113512 - 116289 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_78
Type: pfam
Location: 116333 - 118171 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_79
Type: TC
Location: 118191 - 121370 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_80
Type:
Location: 121820 - 122119 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_81
Type: CAZyme
Location: 122271 - 123629 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4305041_bin.1_k119_6601_77 vegan > omnivore 1.11916 0.00718

🧭 Explore Read Mapping of CGC

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