Cluster: VatanenT_2016_SRR4305041_bin.1_CGC51
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_03999
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_9 | 10014 | 10919 | + | 9.B.104.1.2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_10 | 10924 | 12009 | + | Exo_endo_phos |
| peptidase | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_11 | 12041 | 14128 | + | M03.UPA |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_12 | 14293 | 17310 | + | 2.A.6.4.3 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_13 | 17770 | 19608 | + | POR | POR_N |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_14 | 19612 | 20622 | + | TPP_enzyme_C |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_15 | 20805 | 22442 | - | GH109 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_16 | 22444 | 24657 | - | GH89 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_17 | 24654 | 26249 | - | GH20 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_18 | 26282 | 28675 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_19 | 28774 | 30690 | - | SusD_RagB | SusD-like_3 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_20 | 30703 | 34101 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_21 | 34197 | 34313 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_22 | 34476 | 35603 | - | FecR |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5559 | VatanenT_2016_SRR4305041_bin.1_k119_5559_23 | 35789 | 36934 | - | 1.B.5.1.6 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_9
Type: TC
Location: 10014 - 10919 (+)
Type: TC
Location: 10014 - 10919 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_10
Type: pfam
Location: 10924 - 12009 (+)
Type: pfam
Location: 10924 - 12009 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_11
Type: peptidase
Location: 12041 - 14128 (+)
Type: peptidase
Location: 12041 - 14128 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_12
Type: TC
Location: 14293 - 17310 (+)
Type: TC
Location: 14293 - 17310 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_13
Type: pfam
Location: 17770 - 19608 (+)
Type: pfam
Location: 17770 - 19608 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_14
Type: pfam
Location: 19612 - 20622 (+)
Type: pfam
Location: 19612 - 20622 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_15
Type: CAZyme
Location: 20805 - 22442 (-)
Type: CAZyme
Location: 20805 - 22442 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_16
Type: CAZyme
Location: 22444 - 24657 (-)
Type: CAZyme
Location: 22444 - 24657 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_17
Type: CAZyme
Location: 24654 - 26249 (-)
Type: CAZyme
Location: 24654 - 26249 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_18
Type:
Location: 26282 - 28675 (-)
Type:
Location: 26282 - 28675 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_19
Type: pfam
Location: 28774 - 30690 (-)
Type: pfam
Location: 28774 - 30690 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_20
Type: TC
Location: 30703 - 34101 (-)
Type: TC
Location: 30703 - 34101 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_21
Type:
Location: 34197 - 34313 (-)
Type:
Location: 34197 - 34313 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_22
Type: STP
Location: 34476 - 35603 (-)
Type: STP
Location: 34476 - 35603 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5559_23
Type: TC
Location: 35789 - 36934 (-)
Type: TC
Location: 35789 - 36934 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.