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Cluster: ShaoY_2019_ERR3406195_bin.12_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_2 1250 2605 + GH1
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_3 2878 5313 - GH94
TF ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_4 5783 6799 + LacI
NULL(UNKNOWN) ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_5 6877 8334 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_6 8590 9567 + 3.A.1.1.4
TC ShaoY_2019_ERR3406195_bin.12_k141_4442 ShaoY_2019_ERR3406195_bin.12_k141_4442_7 9586 10479 + 3.A.1.1.48
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_2
Type: CAZyme
Location: 1250 - 2605 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_3
Type: CAZyme
Location: 2878 - 5313 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_4
Type: TF
Location: 5783 - 6799 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_5
Type:
Location: 6877 - 8334 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_6
Type: TC
Location: 8590 - 9567 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4442_7
Type: TC
Location: 9586 - 10479 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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