Cluster: ShaoY_2019_ERR3406085_bin.8_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406085_bin.8
- CGC Family ID: CGCFAM_00289
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_54 | 78980 | 80821 | + | 2.A.114.1.3 |
| pfam | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_55 | 81030 | 81410 | + | YtxH |
| pfam | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_56 | 81433 | 82230 | + | PRC |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_57 | 82274 | 83656 | + | CE4 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_58 | 83903 | 85795 | + | 1.A.26.1.2 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_59 | 85808 | 87049 | + | 2.A.55.3.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_60 | 87349 | 88443 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_10739 | ShaoY_2019_ERR3406085_bin.8_k141_10739_61 | 88778 | 90724 | - | 9.B.97.5.1 |
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_54
Type: TC
Location: 78980 - 80821 (+)
Type: TC
Location: 78980 - 80821 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_55
Type: pfam
Location: 81030 - 81410 (+)
Type: pfam
Location: 81030 - 81410 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_56
Type: pfam
Location: 81433 - 82230 (+)
Type: pfam
Location: 81433 - 82230 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_57
Type: CAZyme
Location: 82274 - 83656 (+)
Type: CAZyme
Location: 82274 - 83656 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_58
Type: TC
Location: 83903 - 85795 (+)
Type: TC
Location: 83903 - 85795 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_59
Type: TC
Location: 85808 - 87049 (+)
Type: TC
Location: 85808 - 87049 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_60
Type:
Location: 87349 - 88443 (-)
Type:
Location: 87349 - 88443 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_10739_61
Type: TC
Location: 88778 - 90724 (-)
Type: TC
Location: 88778 - 90724 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.