Cluster: ShaoY_2019_ERR3405931_bin.18_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_464 | 498515 | 499357 | + | 1.A.35.3.2 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_465 | 499397 | 499870 | - | MarR |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_466 | 499867 | 500295 | - | Flavodoxin_3 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_467 | 500561 | 502363 | + | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_468 | 502360 | 503904 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_469 | 504012 | 505496 | - | GH29 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_470 | 505517 | 506173 | - | Lipase_GDSL | Lipase_GDSL_2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_471 | 506248 | 508056 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_472 | 508148 | 509065 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_473 | 509089 | 510036 | - | 3.A.1.1.29 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_464
Type: TC
Location: 498515 - 499357 (+)
Type: TC
Location: 498515 - 499357 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_465
Type: TF
Location: 499397 - 499870 (-)
Type: TF
Location: 499397 - 499870 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_466
Type: pfam
Location: 499867 - 500295 (-)
Type: pfam
Location: 499867 - 500295 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_467
Type: TC
Location: 500561 - 502363 (+)
Type: TC
Location: 500561 - 502363 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_468
Type: TF
Location: 502360 - 503904 (+)
Type: TF
Location: 502360 - 503904 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_469
Type: CAZyme
Location: 504012 - 505496 (-)
Type: CAZyme
Location: 504012 - 505496 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_470
Type: pfam
Location: 505517 - 506173 (-)
Type: pfam
Location: 505517 - 506173 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_471
Type:
Location: 506248 - 508056 (-)
Type:
Location: 506248 - 508056 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_472
Type: TC
Location: 508148 - 509065 (-)
Type: TC
Location: 508148 - 509065 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_473
Type: TC
Location: 509089 - 510036 (-)
Type: TC
Location: 509089 - 510036 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.