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Cluster: ShaoY_2019_ERR3405931_bin.18_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_10 5951 6316 - 9.B.143.3.6
peptidase ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_11 6428 6703 + S33.UPW
pfam ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_12 6901 7416 + Amidase_6
TC ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_13 7565 8035 - 9.A.24.1.7
NULL(UNKNOWN) ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_14 8261 8560 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_15 8785 10251 - GH32
pfam ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_16 10274 11479 - LacY_symp | Nuc_H_symport | MFS_1 | MFS_1 | MFS_1_like
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_17 11671 13908 - GH3
TF ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_18 13991 15058 - LacI
NULL(UNKNOWN) ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_19 15484 16809 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_20 17014 17895 + 3.A.1.1.45
TC ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_21 17892 18737 + 3.A.1.1.45
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_22 18795 20243 + GH13_18
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_23 20265 21824 + GH13_44
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_24 21901 22692 + CE1
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_25 22761 23531 + CE1
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_23610 ShaoY_2019_ERR3405931_bin.18_k141_23610_26 23680 25791 + GH42
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_10
Type: TC
Location: 5951 - 6316 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_11
Type: peptidase
Location: 6428 - 6703 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_12
Type: pfam
Location: 6901 - 7416 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_13
Type: TC
Location: 7565 - 8035 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_14
Type:
Location: 8261 - 8560 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_15
Type: CAZyme
Location: 8785 - 10251 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_16
Type: pfam
Location: 10274 - 11479 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_17
Type: CAZyme
Location: 11671 - 13908 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_18
Type: TF
Location: 13991 - 15058 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_19
Type:
Location: 15484 - 16809 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_20
Type: TC
Location: 17014 - 17895 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_21
Type: TC
Location: 17892 - 18737 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_22
Type: CAZyme
Location: 18795 - 20243 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_23
Type: CAZyme
Location: 20265 - 21824 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_24
Type: CAZyme
Location: 21901 - 22692 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_25
Type: CAZyme
Location: 22761 - 23531 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_26
Type: CAZyme
Location: 23680 - 25791 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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