Cluster: ShaoY_2019_ERR3405922_bin.6_CGC6
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_134 | 124246 | 126333 | + | 3.A.3.32.3 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_135 | 126412 | 127059 | - | ABC2_membrane_5 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_136 | 127056 | 127367 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_137 | 127339 | 127833 | - | 3.A.1.149.1 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_138 | 127890 | 128264 | - | GntR |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_139 | 128269 | 129072 | - | ABC2_membrane_3 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_140 | 129069 | 129920 | - | 3.A.1.144.1 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_141 | 130189 | 131574 | + | 2.A.2.3.7 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_142 | 131577 | 133868 | + | GH3 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_143 | 133968 | 135206 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_144 | 135298 | 137703 | + | GH3 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_145 | 137704 | 139215 | + | Apiosidase | DUF5060 | DUF5605 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_146 | 139246 | 141402 | + | CBM67 | GH78 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_147 | 141418 | 142461 | + | GH43_24 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_148 | 142599 | 144653 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_149 | 144712 | 146211 | + | CE20 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_150 | 146208 | 146438 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_151 | 146474 | 147832 | + | 2.A.2.1.1 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_152 | 147886 | 149157 | + | GH1 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_134
Type: TC
Location: 124246 - 126333 (+)
Type: TC
Location: 124246 - 126333 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_135
Type: pfam
Location: 126412 - 127059 (-)
Type: pfam
Location: 126412 - 127059 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_136
Type:
Location: 127056 - 127367 (-)
Type:
Location: 127056 - 127367 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_137
Type: TC
Location: 127339 - 127833 (-)
Type: TC
Location: 127339 - 127833 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_138
Type: TF
Location: 127890 - 128264 (-)
Type: TF
Location: 127890 - 128264 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_139
Type: pfam
Location: 128269 - 129072 (-)
Type: pfam
Location: 128269 - 129072 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_140
Type: TC
Location: 129069 - 129920 (-)
Type: TC
Location: 129069 - 129920 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_141
Type: TC
Location: 130189 - 131574 (+)
Type: TC
Location: 130189 - 131574 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_142
Type: CAZyme
Location: 131577 - 133868 (+)
Type: CAZyme
Location: 131577 - 133868 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_143
Type: TF
Location: 133968 - 135206 (+)
Type: TF
Location: 133968 - 135206 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_144
Type: CAZyme
Location: 135298 - 137703 (+)
Type: CAZyme
Location: 135298 - 137703 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_145
Type: pfam
Location: 137704 - 139215 (+)
Type: pfam
Location: 137704 - 139215 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_146
Type: CAZyme
Location: 139246 - 141402 (+)
Type: CAZyme
Location: 139246 - 141402 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_147
Type: CAZyme
Location: 141418 - 142461 (+)
Type: CAZyme
Location: 141418 - 142461 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_148
Type:
Location: 142599 - 144653 (+)
Type:
Location: 142599 - 144653 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_149
Type: CAZyme
Location: 144712 - 146211 (+)
Type: CAZyme
Location: 144712 - 146211 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_150
Type:
Location: 146208 - 146438 (+)
Type:
Location: 146208 - 146438 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_151
Type: TC
Location: 146474 - 147832 (+)
Type: TC
Location: 146474 - 147832 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_152
Type: CAZyme
Location: 147886 - 149157 (+)
Type: CAZyme
Location: 147886 - 149157 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.