Cluster: ShaoY_2019_ERR3405922_bin.6_CGC32
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_00206
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_16 | 18759 | 20174 | + | GH43_35 |
| STP | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_17 | 20344 | 20841 | + | Glyoxalase |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_18 | 20867 | 21757 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_19 | 21754 | 23169 | + | GH4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_20 | 23187 | 24023 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_21 | 24197 | 25597 | + | 2.A.2.3.3 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_22 | 25667 | 28426 | + | CBM67 | GH78 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_23 | 28444 | 30867 | + | GH2 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_16
Type: CAZyme
Location: 18759 - 20174 (+)
Type: CAZyme
Location: 18759 - 20174 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_17
Type: STP
Location: 20344 - 20841 (+)
Type: STP
Location: 20344 - 20841 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_18
Type: TF
Location: 20867 - 21757 (+)
Type: TF
Location: 20867 - 21757 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_19
Type: CAZyme
Location: 21754 - 23169 (+)
Type: CAZyme
Location: 21754 - 23169 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_20
Type:
Location: 23187 - 24023 (+)
Type:
Location: 23187 - 24023 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_21
Type: TC
Location: 24197 - 25597 (+)
Type: TC
Location: 24197 - 25597 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_22
Type: CAZyme
Location: 25667 - 28426 (+)
Type: CAZyme
Location: 25667 - 28426 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_23
Type: CAZyme
Location: 28444 - 30867 (+)
Type: CAZyme
Location: 28444 - 30867 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.