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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC83

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_6 4323 5684 + 3.A.1.1.40
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_7 5763 6665 + 3.A.1.1.36
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_8 6679 7494 + 3.A.1.1.39
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_9 7571 8896 + GH4
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_10 8913 10148 + NULL(UNKNOWN)
[View Structural Homologs]
TF ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_11 10421 12028 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_12 12025 13812 + 8.A.59.2.1
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_13 14074 14976 + 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_14 14993 15892 + 3.A.1.1.29
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_15 15924 17642 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_16 17685 19976 + GH139
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4852 ShaoY_2019_ERR3405831_bin.2_k141_4852_17 20883 22880 + GH151
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_6
Type: TC
Location: 4323 - 5684 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_7
Type: TC
Location: 5763 - 6665 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_8
Type: TC
Location: 6679 - 7494 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_9
Type: CAZyme
Location: 7571 - 8896 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_10
Type:
Location: 8913 - 10148 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_11
Type: TF
Location: 10421 - 12028 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_12
Type: TC
Location: 12025 - 13812 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_13
Type: TC
Location: 14074 - 14976 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_14
Type: TC
Location: 14993 - 15892 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_15
Type:
Location: 15924 - 17642 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_16
Type: CAZyme
Location: 17685 - 19976 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4852_17
Type: CAZyme
Location: 20883 - 22880 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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