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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_39 45584 46159 + 9.B.156.3.1
TC ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_40 46171 46695 + 9.B.156.3.1
NULL(UNKNOWN) ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_41 46816 47037 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_42 47304 47744 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_43 48724 53619 + CBM32
STP ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_44 54100 54687 - TetR_N
TC ShaoY_2019_ERR3405274_bin.1_k141_5546 ShaoY_2019_ERR3405274_bin.1_k141_5546_45 54813 55514 + 3.A.1.122.7
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_39
Type: TC
Location: 45584 - 46159 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_40
Type: TC
Location: 46171 - 46695 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_41
Type:
Location: 46816 - 47037 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_42
Type:
Location: 47304 - 47744 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_43
Type: CAZyme
Location: 48724 - 53619 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_44
Type: STP
Location: 54100 - 54687 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5546_45
Type: TC
Location: 54813 - 55514 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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