Cluster: ShaoY_2019_ERR3405274_bin.1_CGC51
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_00036
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_25 | 24970 | 25443 | + | 9.B.18.1.2 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_26 | 25493 | 26440 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_N |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_27 | 26711 | 27496 | + | GT111 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_28 | 27547 | 28599 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_29 | 28621 | 29685 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_30 | 29736 | 30809 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_31 | 30839 | 31873 | + | GT113 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_32 | 31894 | 33177 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_33 | 33164 | 34276 | + | Amino_oxidase | GLF | NAD_binding_8 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_4388 | ShaoY_2019_ERR3405274_bin.1_k141_4388_34 | 34278 | 35714 | + | 2.A.66.2.16 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_25
Type: TC
Location: 24970 - 25443 (+)
Type: TC
Location: 24970 - 25443 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_26
Type: pfam
Location: 25493 - 26440 (+)
Type: pfam
Location: 25493 - 26440 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_27
Type: CAZyme
Location: 26711 - 27496 (+)
Type: CAZyme
Location: 26711 - 27496 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_28
Type: CAZyme
Location: 27547 - 28599 (+)
Type: CAZyme
Location: 27547 - 28599 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_29
Type: CAZyme
Location: 28621 - 29685 (+)
Type: CAZyme
Location: 28621 - 29685 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_30
Type: CAZyme
Location: 29736 - 30809 (+)
Type: CAZyme
Location: 29736 - 30809 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_31
Type: CAZyme
Location: 30839 - 31873 (+)
Type: CAZyme
Location: 30839 - 31873 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_32
Type:
Location: 31894 - 33177 (+)
Type:
Location: 31894 - 33177 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_33
Type: pfam
Location: 33164 - 34276 (+)
Type: pfam
Location: 33164 - 34276 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_4388_34
Type: TC
Location: 34278 - 35714 (+)
Type: TC
Location: 34278 - 35714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.