Cluster: ShaoY_2019_ERR3405274_bin.1_CGC34
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_02957
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_11 | 10857 | 11939 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_12 | 11953 | 12852 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_13 | 12855 | 14942 | - | 3.A.1.1.26 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_14 | 14957 | 15442 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_15 | 15505 | 16815 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_16 | 16879 | 19332 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_17 | 19338 | 20816 | - | GH77 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_18 | 21251 | 23197 | + | GH133 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_19 | 23465 | 25363 | - | GH13_14 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2423 | ShaoY_2019_ERR3405274_bin.1_k141_2423_20 | 25382 | 27532 | - | GH31_1 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_11
Type: TC
Location: 10857 - 11939 (-)
Type: TC
Location: 10857 - 11939 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_12
Type: TC
Location: 11953 - 12852 (-)
Type: TC
Location: 11953 - 12852 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_13
Type: TC
Location: 12855 - 14942 (-)
Type: TC
Location: 12855 - 14942 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_14
Type:
Location: 14957 - 15442 (-)
Type:
Location: 14957 - 15442 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_15
Type:
Location: 15505 - 16815 (-)
Type:
Location: 15505 - 16815 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_16
Type: CAZyme
Location: 16879 - 19332 (-)
Type: CAZyme
Location: 16879 - 19332 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_17
Type: CAZyme
Location: 19338 - 20816 (-)
Type: CAZyme
Location: 19338 - 20816 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_18
Type: CAZyme
Location: 21251 - 23197 (+)
Type: CAZyme
Location: 21251 - 23197 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_19
Type: CAZyme
Location: 23465 - 25363 (-)
Type: CAZyme
Location: 23465 - 25363 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2423_20
Type: CAZyme
Location: 25382 - 27532 (-)
Type: CAZyme
Location: 25382 - 27532 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.