Cluster: ShaoY_2019_ERR3404980_bin.1_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_228 | 291340 | 294348 | + | GH2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_229 | 294352 | 294807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_230 | 294961 | 296424 | + | 2.A.3.7.4 |
| STP | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_231 | 296846 | 297094 | + | PTS-HPr |
| STP | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_232 | 297283 | 297525 | + | FeoA |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_233 | 297565 | 297786 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_234 | 297910 | 300237 | + | 9.A.8.1.6 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_228
Type: CAZyme
Location: 291340 - 294348 (+)
Type: CAZyme
Location: 291340 - 294348 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_229
Type:
Location: 294352 - 294807 (+)
Type:
Location: 294352 - 294807 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_230
Type: TC
Location: 294961 - 296424 (+)
Type: TC
Location: 294961 - 296424 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_231
Type: STP
Location: 296846 - 297094 (+)
Type: STP
Location: 296846 - 297094 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_232
Type: STP
Location: 297283 - 297525 (+)
Type: STP
Location: 297283 - 297525 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_233
Type: TC
Location: 297565 - 297786 (+)
Type: TC
Location: 297565 - 297786 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_234
Type: TC
Location: 297910 - 300237 (+)
Type: TC
Location: 297910 - 300237 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.