Cluster: ShaoY_2019_ERR3404937_bin.4_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_00011
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_199 | 246288 | 247418 | - | GT4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_200 | 247429 | 248931 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_201 | 249053 | 250183 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_202 | 250180 | 251217 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_203 | 251267 | 253807 | - | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_204 | 253809 | 255302 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_205 | 255436 | 256368 | + | 3.A.1.103.4 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3645 | ShaoY_2019_ERR3404937_bin.4_k141_3645_206 | 256371 | 257576 | + | 3.A.1.103.5 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_199
Type: CAZyme
Location: 246288 - 247418 (-)
Type: CAZyme
Location: 246288 - 247418 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_200
Type:
Location: 247429 - 248931 (-)
Type:
Location: 247429 - 248931 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_201
Type: CAZyme
Location: 249053 - 250183 (+)
Type: CAZyme
Location: 249053 - 250183 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_202
Type: CAZyme
Location: 250180 - 251217 (+)
Type: CAZyme
Location: 250180 - 251217 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_203
Type: CAZyme
Location: 251267 - 253807 (-)
Type: CAZyme
Location: 251267 - 253807 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_204
Type:
Location: 253809 - 255302 (-)
Type:
Location: 253809 - 255302 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_205
Type: TC
Location: 255436 - 256368 (+)
Type: TC
Location: 255436 - 256368 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3645_206
Type: TC
Location: 256371 - 257576 (+)
Type: TC
Location: 256371 - 257576 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.