Cluster: ShaoY_2019_ERR3404906_bin.6_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_15 | 13639 | 14307 | + | 3.A.1.122.14 |
| TF | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_16 | 14489 | 14908 | + | MerR |
| TF | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_17 | 15041 | 15739 | + | GntR |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_18 | 15950 | 17476 | + | 2.A.14.1.3 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_19 | 17502 | 18290 | + | ETF |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_20 | 18304 | 19494 | + | ETF_alpha | ETF |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_21 | 19497 | 20897 | + | AA4 |
| STP | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_22 | 21084 | 21662 | + | TetR_N |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_23 | 21758 | 23185 | + | 2.A.1.3.30 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_24 | 23263 | 24612 | + | AA7 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_25 | 24686 | 25726 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_26 | 25873 | 26622 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_27 | 26814 | 28376 | + | 2.A.49.5.5 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_15
Type: TC
Location: 13639 - 14307 (+)
Type: TC
Location: 13639 - 14307 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_16
Type: TF
Location: 14489 - 14908 (+)
Type: TF
Location: 14489 - 14908 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_17
Type: TF
Location: 15041 - 15739 (+)
Type: TF
Location: 15041 - 15739 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_18
Type: TC
Location: 15950 - 17476 (+)
Type: TC
Location: 15950 - 17476 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_19
Type: pfam
Location: 17502 - 18290 (+)
Type: pfam
Location: 17502 - 18290 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_20
Type: pfam
Location: 18304 - 19494 (+)
Type: pfam
Location: 18304 - 19494 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_21
Type: CAZyme
Location: 19497 - 20897 (+)
Type: CAZyme
Location: 19497 - 20897 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_22
Type: STP
Location: 21084 - 21662 (+)
Type: STP
Location: 21084 - 21662 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_23
Type: TC
Location: 21758 - 23185 (+)
Type: TC
Location: 21758 - 23185 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_24
Type: CAZyme
Location: 23263 - 24612 (+)
Type: CAZyme
Location: 23263 - 24612 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_25
Type:
Location: 24686 - 25726 (-)
Type:
Location: 24686 - 25726 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_26
Type:
Location: 25873 - 26622 (+)
Type:
Location: 25873 - 26622 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_27
Type: TC
Location: 26814 - 28376 (+)
Type: TC
Location: 26814 - 28376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.