Cluster: Rep_556_CGC5
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 15
- Substrate:
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_02537
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_556_c_0 | Rep_556_c_0_92 | 134517 | 136391 | - | GH97 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_93 | 136435 | 138003 | - | GH20 |
| pfam | Rep_556_c_0 | Rep_556_c_0_94 | 138152 | 139867 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_0 | Rep_556_c_0_95 | 139882 | 143199 | - | 1.B.14.6.1 |
| STP | Rep_556_c_0 | Rep_556_c_0_96 | 143349 | 144305 | - | FecR |
| TF | Rep_556_c_0 | Rep_556_c_0_97 | 144313 | 144924 | - | GerE |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_98 | 145509 | 147449 | - | GH97 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_99 | 147460 | 149769 | - | GH95 |
| TC | Rep_556_c_0 | Rep_556_c_0_100 | 149864 | 151504 | - | 8.A.46.1.3 |
| TC | Rep_556_c_0 | Rep_556_c_0_101 | 151517 | 154846 | - | 1.B.14.6.1 |
| STP | Rep_556_c_0 | Rep_556_c_0_102 | 155023 | 156033 | - | FecR |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_103 | 156215 | 158539 | - | GH95 |
| STP | Rep_556_c_0 | Rep_556_c_0_104 | 158578 | 159123 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_105 | 159343 | 161559 | - | GH3 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_106 | 161573 | 164017 | - | GH2 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_107 | 164047 | 165783 | - | CBM32 | GH43_28 |
| NULL(UNKNOWN) | Rep_556_c_0 | Rep_556_c_0_108 | 165944 | 168223 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_109 | 168235 | 170538 | - | GH182 |
| pfam | Rep_556_c_0 | Rep_556_c_0_110 | 170543 | 173230 | - | Glyco_hydro_38N |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_111 | 173250 | 174671 | - | GH43_2 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_112 | 174678 | 176573 | - | GH120 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_113 | 176698 | 178956 | - | GH92 |
| pfam | Rep_556_c_0 | Rep_556_c_0_114 | 178992 | 181958 | - | Laminin_G_3 |
| NULL(UNKNOWN) | Rep_556_c_0 | Rep_556_c_0_115 | 182479 | 184743 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_116 | 184830 | 186413 | - | CBM91 | GH43_10 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_117 | 186424 | 188673 | - | GH182 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_118 | 188687 | 190969 | - | CBM6 | GH120 |
Gene ID: Rep_556_c_0_92
Type: CAZyme
Location: 134517 - 136391 (-)
Type: CAZyme
Location: 134517 - 136391 (-)
Gene ID: Rep_556_c_0_93
Type: CAZyme
Location: 136435 - 138003 (-)
Type: CAZyme
Location: 136435 - 138003 (-)
Gene ID: Rep_556_c_0_94
Type: pfam
Location: 138152 - 139867 (-)
Type: pfam
Location: 138152 - 139867 (-)
Gene ID: Rep_556_c_0_95
Type: TC
Location: 139882 - 143199 (-)
Type: TC
Location: 139882 - 143199 (-)
Gene ID: Rep_556_c_0_96
Type: STP
Location: 143349 - 144305 (-)
Type: STP
Location: 143349 - 144305 (-)
Gene ID: Rep_556_c_0_97
Type: TF
Location: 144313 - 144924 (-)
Type: TF
Location: 144313 - 144924 (-)
Gene ID: Rep_556_c_0_98
Type: CAZyme
Location: 145509 - 147449 (-)
Type: CAZyme
Location: 145509 - 147449 (-)
Gene ID: Rep_556_c_0_99
Type: CAZyme
Location: 147460 - 149769 (-)
Type: CAZyme
Location: 147460 - 149769 (-)
Gene ID: Rep_556_c_0_100
Type: TC
Location: 149864 - 151504 (-)
Type: TC
Location: 149864 - 151504 (-)
Gene ID: Rep_556_c_0_101
Type: TC
Location: 151517 - 154846 (-)
Type: TC
Location: 151517 - 154846 (-)
Gene ID: Rep_556_c_0_102
Type: STP
Location: 155023 - 156033 (-)
Type: STP
Location: 155023 - 156033 (-)
Gene ID: Rep_556_c_0_103
Type: CAZyme
Location: 156215 - 158539 (-)
Type: CAZyme
Location: 156215 - 158539 (-)
Gene ID: Rep_556_c_0_104
Type: STP
Location: 158578 - 159123 (-)
Type: STP
Location: 158578 - 159123 (-)
Gene ID: Rep_556_c_0_105
Type: CAZyme
Location: 159343 - 161559 (-)
Type: CAZyme
Location: 159343 - 161559 (-)
Gene ID: Rep_556_c_0_106
Type: CAZyme
Location: 161573 - 164017 (-)
Type: CAZyme
Location: 161573 - 164017 (-)
Gene ID: Rep_556_c_0_107
Type: CAZyme
Location: 164047 - 165783 (-)
Type: CAZyme
Location: 164047 - 165783 (-)
Gene ID: Rep_556_c_0_108
Type:
Location: 165944 - 168223 (-)
Type:
Location: 165944 - 168223 (-)
Gene ID: Rep_556_c_0_109
Type: CAZyme
Location: 168235 - 170538 (-)
Type: CAZyme
Location: 168235 - 170538 (-)
Gene ID: Rep_556_c_0_110
Type: pfam
Location: 170543 - 173230 (-)
Type: pfam
Location: 170543 - 173230 (-)
Gene ID: Rep_556_c_0_111
Type: CAZyme
Location: 173250 - 174671 (-)
Type: CAZyme
Location: 173250 - 174671 (-)
Gene ID: Rep_556_c_0_112
Type: CAZyme
Location: 174678 - 176573 (-)
Type: CAZyme
Location: 174678 - 176573 (-)
Gene ID: Rep_556_c_0_113
Type: CAZyme
Location: 176698 - 178956 (-)
Type: CAZyme
Location: 176698 - 178956 (-)
Gene ID: Rep_556_c_0_114
Type: pfam
Location: 178992 - 181958 (-)
Type: pfam
Location: 178992 - 181958 (-)
Gene ID: Rep_556_c_0_115
Type:
Location: 182479 - 184743 (-)
Type:
Location: 182479 - 184743 (-)
Gene ID: Rep_556_c_0_116
Type: CAZyme
Location: 184830 - 186413 (-)
Type: CAZyme
Location: 184830 - 186413 (-)
Gene ID: Rep_556_c_0_117
Type: CAZyme
Location: 186424 - 188673 (-)
Type: CAZyme
Location: 186424 - 188673 (-)
Gene ID: Rep_556_c_0_118
Type: CAZyme
Location: 188687 - 190969 (-)
Type: CAZyme
Location: 188687 - 190969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.