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Cluster: Rep_556_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_7 Rep_556_c_7_1 74 1273 - 2.A.1.46.5
NULL(UNKNOWN) Rep_556_c_7 Rep_556_c_7_2 1343 1453 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_556_c_7 Rep_556_c_7_3 1469 2572 - 2-Hacid_dh | 2-Hacid_dh_C
TC Rep_556_c_7 Rep_556_c_7_4 3103 6201 + 1.B.14.6.1
TC Rep_556_c_7 Rep_556_c_7_5 6230 7729 + 8.A.46.3.3
CAZyme Rep_556_c_7 Rep_556_c_7_6 7921 9018 + GH43_33
pfam Rep_556_c_7 Rep_556_c_7_7 9095 9700 + DUF4254
CAZyme Rep_556_c_7 Rep_556_c_7_8 9700 10728 + GT9
pfam Rep_556_c_7 Rep_556_c_7_9 10756 11958 + GT87
NULL(UNKNOWN) Rep_556_c_7 Rep_556_c_7_10 11955 12902 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_7 Rep_556_c_7_11 13016 13825 + GT2
NULL(UNKNOWN) Rep_556_c_7 Rep_556_c_7_12 14068 14844 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_7 Rep_556_c_7_13 15064 16197 - GT4
NULL(UNKNOWN) Rep_556_c_7 Rep_556_c_7_14 16194 16409 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_556_c_7 Rep_556_c_7_15 16525 17709 - GT87
CAZyme Rep_556_c_7 Rep_556_c_7_16 17706 18506 - CE4
CAZyme Rep_556_c_7 Rep_556_c_7_17 18503 19234 - GT2
pfam Rep_556_c_7 Rep_556_c_7_18 19422 20714 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
NULL(UNKNOWN) Rep_556_c_7 Rep_556_c_7_19 20740 21597 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_7 Rep_556_c_7_20 21594 22613 - GT90
pfam Rep_556_c_7 Rep_556_c_7_21 22625 23260 - RNase_H | Cauli_VI
STP Rep_556_c_7 Rep_556_c_7_22 23395 23916 + SKI
TC Rep_556_c_7 Rep_556_c_7_23 23965 25176 + 3.D.2.4.1
Gene ID: Rep_556_c_7_1
Type: TC
Location: 74 - 1273 (-)
Gene ID: Rep_556_c_7_2
Type:
Location: 1343 - 1453 (-)
Gene ID: Rep_556_c_7_3
Type: pfam
Location: 1469 - 2572 (-)
Gene ID: Rep_556_c_7_4
Type: TC
Location: 3103 - 6201 (+)
Gene ID: Rep_556_c_7_5
Type: TC
Location: 6230 - 7729 (+)
Gene ID: Rep_556_c_7_6
Type: CAZyme
Location: 7921 - 9018 (+)
Gene ID: Rep_556_c_7_7
Type: pfam
Location: 9095 - 9700 (+)
Gene ID: Rep_556_c_7_8
Type: CAZyme
Location: 9700 - 10728 (+)
Gene ID: Rep_556_c_7_9
Type: pfam
Location: 10756 - 11958 (+)
Gene ID: Rep_556_c_7_10
Type:
Location: 11955 - 12902 (+)
Gene ID: Rep_556_c_7_11
Type: CAZyme
Location: 13016 - 13825 (+)
Gene ID: Rep_556_c_7_12
Type:
Location: 14068 - 14844 (+)
Gene ID: Rep_556_c_7_13
Type: CAZyme
Location: 15064 - 16197 (-)
Gene ID: Rep_556_c_7_14
Type:
Location: 16194 - 16409 (-)
Gene ID: Rep_556_c_7_15
Type: pfam
Location: 16525 - 17709 (-)
Gene ID: Rep_556_c_7_16
Type: CAZyme
Location: 17706 - 18506 (-)
Gene ID: Rep_556_c_7_17
Type: CAZyme
Location: 18503 - 19234 (-)
Gene ID: Rep_556_c_7_18
Type: pfam
Location: 19422 - 20714 (+)
Gene ID: Rep_556_c_7_19
Type:
Location: 20740 - 21597 (+)
Gene ID: Rep_556_c_7_20
Type: CAZyme
Location: 21594 - 22613 (-)
Gene ID: Rep_556_c_7_21
Type: pfam
Location: 22625 - 23260 (-)
Gene ID: Rep_556_c_7_22
Type: STP
Location: 23395 - 23916 (+)
Gene ID: Rep_556_c_7_23
Type: TC
Location: 23965 - 25176 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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