Cluster: Rep_500_CGC85
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_01476
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_500_c_266 | Rep_500_c_266_3 | 1867 | 3408 | - | PL9_1 |
| CAZyme | Rep_500_c_266 | Rep_500_c_266_4 | 3421 | 4884 | - | GH28 |
| TF | Rep_500_c_266 | Rep_500_c_266_5 | 5117 | 9481 | + | HTH_AraC |
| CAZyme | Rep_500_c_266 | Rep_500_c_266_6 | 9684 | 12647 | + | GH2 |
| pfam | Rep_500_c_266 | Rep_500_c_266_7 | 12785 | 13663 | + | SASA |
| TC | Rep_500_c_266 | Rep_500_c_266_8 | 13870 | 17001 | + | 1.B.14.6.1 |
| pfam | Rep_500_c_266 | Rep_500_c_266_9 | 17017 | 18621 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_500_c_266 | Rep_500_c_266_10 | 18708 | 20231 | - | 8.A.46.3.3 |
| TC | Rep_500_c_266 | Rep_500_c_266_11 | 20245 | 23385 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_500_c_266 | Rep_500_c_266_12 | 23896 | 24669 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_500_c_266 | Rep_500_c_266_13 | 24710 | 25987 | - | CE12 |
Gene ID: Rep_500_c_266_3
Type: CAZyme
Location: 1867 - 3408 (-)
Type: CAZyme
Location: 1867 - 3408 (-)
Gene ID: Rep_500_c_266_4
Type: CAZyme
Location: 3421 - 4884 (-)
Type: CAZyme
Location: 3421 - 4884 (-)
Gene ID: Rep_500_c_266_5
Type: TF
Location: 5117 - 9481 (+)
Type: TF
Location: 5117 - 9481 (+)
Gene ID: Rep_500_c_266_6
Type: CAZyme
Location: 9684 - 12647 (+)
Type: CAZyme
Location: 9684 - 12647 (+)
Gene ID: Rep_500_c_266_7
Type: pfam
Location: 12785 - 13663 (+)
Type: pfam
Location: 12785 - 13663 (+)
Gene ID: Rep_500_c_266_8
Type: TC
Location: 13870 - 17001 (+)
Type: TC
Location: 13870 - 17001 (+)
Gene ID: Rep_500_c_266_9
Type: pfam
Location: 17017 - 18621 (+)
Type: pfam
Location: 17017 - 18621 (+)
Gene ID: Rep_500_c_266_10
Type: TC
Location: 18708 - 20231 (-)
Type: TC
Location: 18708 - 20231 (-)
Gene ID: Rep_500_c_266_11
Type: TC
Location: 20245 - 23385 (-)
Type: TC
Location: 20245 - 23385 (-)
Gene ID: Rep_500_c_266_12
Type:
Location: 23896 - 24669 (-)
Type:
Location: 23896 - 24669 (-)
Gene ID: Rep_500_c_266_13
Type: CAZyme
Location: 24710 - 25987 (-)
Type: CAZyme
Location: 24710 - 25987 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_266_3 | vegan > omnivore | 1.79934 | 0.00358 |
| Rep_500_c_266_3 | vegetarian > omnivore | 1.43760 | 0.03276 |
| Rep_500_c_266_5 | vegan > omnivore | 1.61743 | 0.00358 |
| Rep_500_c_266_5 | vegetarian > omnivore | 1.09888 | 0.02280 |
| Rep_500_c_266_7 | vegan > omnivore | 1.59543 | 0.00358 |
| Rep_500_c_266_7 | vegetarian > omnivore | 1.01261 | 0.04501 |
| Rep_500_c_266_8 | vegan > omnivore | 1.77666 | 0.00358 |
| Rep_500_c_266_8 | vegetarian > omnivore | 1.28030 | 0.02280 |
| Rep_500_c_266_12 | vegan > omnivore | 2.79193 | 0.00358 |
| Rep_500_c_266_12 | vegetarian > omnivore | 2.30800 | 0.02280 |
| Rep_500_c_266_13 | vegan > omnivore | 1.77180 | 0.00358 |