Cluster: Rep_456_CGC42
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: arabinogalactan
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00928
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_13 | Rep_456_c_13_40 | 60786 | 62132 | + | 2.A.1.4.10 |
| CAZyme | Rep_456_c_13 | Rep_456_c_13_41 | 62223 | 65777 | - | CBM67 | GH78 |
| CAZyme | Rep_456_c_13 | Rep_456_c_13_42 | 66355 | 68868 | - | GH51_2 |
| CAZyme | Rep_456_c_13 | Rep_456_c_13_43 | 69019 | 70365 | - | CBM32 |
| pfam | Rep_456_c_13 | Rep_456_c_13_44 | 70389 | 72377 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_456_c_13 | Rep_456_c_13_45 | 72431 | 75598 | - | 1.B.14.6.1 |
| CAZyme | Rep_456_c_13 | Rep_456_c_13_46 | 75811 | 78210 | - | GH2 |
| NULL(UNKNOWN) | Rep_456_c_13 | Rep_456_c_13_47 | 78411 | 79658 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_456_c_13 | Rep_456_c_13_48 | 79826 | 83698 | - | HTH_AraC |
| TC | Rep_456_c_13 | Rep_456_c_13_49 | 83818 | 84936 | - | 3.A.11.1.3 |
Gene ID: Rep_456_c_13_40
Type: TC
Location: 60786 - 62132 (+)
Type: TC
Location: 60786 - 62132 (+)
Gene ID: Rep_456_c_13_41
Type: CAZyme
Location: 62223 - 65777 (-)
Type: CAZyme
Location: 62223 - 65777 (-)
Gene ID: Rep_456_c_13_42
Type: CAZyme
Location: 66355 - 68868 (-)
Type: CAZyme
Location: 66355 - 68868 (-)
Gene ID: Rep_456_c_13_43
Type: CAZyme
Location: 69019 - 70365 (-)
Type: CAZyme
Location: 69019 - 70365 (-)
Gene ID: Rep_456_c_13_44
Type: pfam
Location: 70389 - 72377 (-)
Type: pfam
Location: 70389 - 72377 (-)
Gene ID: Rep_456_c_13_45
Type: TC
Location: 72431 - 75598 (-)
Type: TC
Location: 72431 - 75598 (-)
Gene ID: Rep_456_c_13_46
Type: CAZyme
Location: 75811 - 78210 (-)
Type: CAZyme
Location: 75811 - 78210 (-)
Gene ID: Rep_456_c_13_47
Type:
Location: 78411 - 79658 (-)
Type:
Location: 78411 - 79658 (-)
Gene ID: Rep_456_c_13_48
Type: TF
Location: 79826 - 83698 (-)
Type: TF
Location: 79826 - 83698 (-)
Gene ID: Rep_456_c_13_49
Type: TC
Location: 83818 - 84936 (-)
Type: TC
Location: 83818 - 84936 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_13_41 | vegetarian > omnivore | 1.63293 | 0.00065 |
| Rep_456_c_13_42 | vegan > omnivore | 1.41090 | 0.02809 |
| Rep_456_c_13_42 | vegetarian > omnivore | 1.34260 | 0.00065 |
| Rep_456_c_13_43 | vegan > omnivore | 1.29231 | 0.02809 |
| Rep_456_c_13_43 | vegetarian > omnivore | 2.01737 | 0.00065 |
| Rep_456_c_13_44 | vegan > omnivore | 1.09602 | 0.02809 |
| Rep_456_c_13_47 | vegan > omnivore | 2.47185 | 0.02809 |
| Rep_456_c_13_47 | vegetarian > omnivore | 1.97197 | 0.00065 |
| Rep_456_c_13_48 | vegan > omnivore | 1.21262 | 0.02809 |