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Cluster: Rep_456_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_13 Rep_456_c_13_1 426 3017 + GH3
CAZyme Rep_456_c_13 Rep_456_c_13_2 3057 4316 + GH8
sulfatase Rep_456_c_13 Rep_456_c_13_3 4588 5718 + S1_22
CAZyme Rep_456_c_13 Rep_456_c_13_4 6056 7696 + GH29
TC Rep_456_c_13 Rep_456_c_13_5 7787 10798 + 1.B.14.6.1
TC Rep_456_c_13 Rep_456_c_13_6 10815 12491 + 8.A.46.1.6
NULL(UNKNOWN) Rep_456_c_13 Rep_456_c_13_7 12518 14308 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_456_c_13 Rep_456_c_13_8 14320 14706 + rhaM
CAZyme Rep_456_c_13 Rep_456_c_13_9 14719 18258 + GH106
CAZyme Rep_456_c_13 Rep_456_c_13_10 18278 20185 + GH97
TC Rep_456_c_13 Rep_456_c_13_11 20298 23114 + 1.B.14.12.2
pfam Rep_456_c_13 Rep_456_c_13_12 23145 24074 + Metallophos
pfam Rep_456_c_13 Rep_456_c_13_13 24166 25506 + DUF4784 | DUF4784_N
TC Rep_456_c_13 Rep_456_c_13_14 25699 27501 - 1.A.23.1.4
TC Rep_456_c_13 Rep_456_c_13_15 27624 28583 + 2.A.19.5.2
Gene ID: Rep_456_c_13_1
Type: CAZyme
Location: 426 - 3017 (+)
Gene ID: Rep_456_c_13_2
Type: CAZyme
Location: 3057 - 4316 (+)
Gene ID: Rep_456_c_13_3
Type: sulfatase
Location: 4588 - 5718 (+)
Gene ID: Rep_456_c_13_4
Type: CAZyme
Location: 6056 - 7696 (+)
Gene ID: Rep_456_c_13_5
Type: TC
Location: 7787 - 10798 (+)
Gene ID: Rep_456_c_13_6
Type: TC
Location: 10815 - 12491 (+)
Gene ID: Rep_456_c_13_7
Type:
Location: 12518 - 14308 (+)
Gene ID: Rep_456_c_13_8
Type: pfam
Location: 14320 - 14706 (+)
Gene ID: Rep_456_c_13_9
Type: CAZyme
Location: 14719 - 18258 (+)
Gene ID: Rep_456_c_13_10
Type: CAZyme
Location: 18278 - 20185 (+)
Gene ID: Rep_456_c_13_11
Type: TC
Location: 20298 - 23114 (+)
Gene ID: Rep_456_c_13_12
Type: pfam
Location: 23145 - 24074 (+)
Gene ID: Rep_456_c_13_13
Type: pfam
Location: 24166 - 25506 (+)
Gene ID: Rep_456_c_13_14
Type: TC
Location: 25699 - 27501 (-)
Gene ID: Rep_456_c_13_15
Type: TC
Location: 27624 - 28583 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_13_2 vegan > omnivore 1.50142 0.02809
Rep_456_c_13_2 vegetarian > omnivore 1.34267 0.00065
Rep_456_c_13_3 vegan > omnivore 1.15295 0.02809
Rep_456_c_13_3 vegetarian > omnivore 1.44544 0.00065
Rep_456_c_13_4 vegetarian > omnivore 1.34171 0.00065
Rep_456_c_13_4 vegetarian > vegan 1.30428 0.00942
Rep_456_c_13_13 vegan > omnivore 1.47294 0.02809
Rep_456_c_13_13 vegetarian > omnivore 1.83147 0.00065

🧭 Explore Read Mapping of CGC

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