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Cluster: Rep_3001_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3001_c_29 Rep_3001_c_29_19 21754 22536 + 3.A.1.134.4
TC Rep_3001_c_29 Rep_3001_c_29_20 22533 24566 + 3.A.1.134.4
CAZyme Rep_3001_c_29 Rep_3001_c_29_21 24648 25391 + GT51
TC Rep_3001_c_29 Rep_3001_c_29_22 25536 26270 + 3.A.1.147.2
NULL(UNKNOWN) Rep_3001_c_29 Rep_3001_c_29_23 26263 27834 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3001_c_29 Rep_3001_c_29_24 27903 28826 - SUFBD_core
TC Rep_3001_c_29 Rep_3001_c_29_25 28819 29562 - 3.A.1.12.4
NULL(UNKNOWN) Rep_3001_c_29 Rep_3001_c_29_26 29821 30927 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3001_c_29 Rep_3001_c_29_27 31153 31659 + DUF4358
TC Rep_3001_c_29 Rep_3001_c_29_28 31739 33142 + 2.A.50.2.1
Gene ID: Rep_3001_c_29_19
Type: TC
Location: 21754 - 22536 (+)
Gene ID: Rep_3001_c_29_20
Type: TC
Location: 22533 - 24566 (+)
Gene ID: Rep_3001_c_29_21
Type: CAZyme
Location: 24648 - 25391 (+)
Gene ID: Rep_3001_c_29_22
Type: TC
Location: 25536 - 26270 (+)
Gene ID: Rep_3001_c_29_23
Type:
Location: 26263 - 27834 (+)
Gene ID: Rep_3001_c_29_24
Type: pfam
Location: 27903 - 28826 (-)
Gene ID: Rep_3001_c_29_25
Type: TC
Location: 28819 - 29562 (-)
Gene ID: Rep_3001_c_29_26
Type:
Location: 29821 - 30927 (-)
Gene ID: Rep_3001_c_29_27
Type: pfam
Location: 31153 - 31659 (+)
Gene ID: Rep_3001_c_29_28
Type: TC
Location: 31739 - 33142 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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