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Cluster: Rep_2178_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2178_c_9 Rep_2178_c_9_60 63830 66274 - GH94
TF Rep_2178_c_9 Rep_2178_c_9_61 66741 67754 + LacI
NULL(UNKNOWN) Rep_2178_c_9 Rep_2178_c_9_62 67833 69269 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2178_c_9 Rep_2178_c_9_63 69474 70385 + 3.A.1.1.4
TC Rep_2178_c_9 Rep_2178_c_9_64 70382 71251 + 3.A.1.1.26
NULL(UNKNOWN) Rep_2178_c_9 Rep_2178_c_9_65 71351 71485 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2178_c_9 Rep_2178_c_9_66 71559 75470 + 2.A.6.3.6
Gene ID: Rep_2178_c_9_60
Type: CAZyme
Location: 63830 - 66274 (-)
Gene ID: Rep_2178_c_9_61
Type: TF
Location: 66741 - 67754 (+)
Gene ID: Rep_2178_c_9_62
Type:
Location: 67833 - 69269 (+)
Gene ID: Rep_2178_c_9_63
Type: TC
Location: 69474 - 70385 (+)
Gene ID: Rep_2178_c_9_64
Type: TC
Location: 70382 - 71251 (+)
Gene ID: Rep_2178_c_9_65
Type:
Location: 71351 - 71485 (+)
Gene ID: Rep_2178_c_9_66
Type: TC
Location: 71559 - 75470 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_9_61 vegetarian > vegan 1.25152 0.00455

🧭 Explore Read Mapping of CGC

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