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Cluster: Rep_2178_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2178_c_4 Rep_2178_c_4_13 7279 8223 + GH113
pfam Rep_2178_c_4 Rep_2178_c_4_14 8268 10727 + fn3
TC Rep_2178_c_4 Rep_2178_c_4_15 11067 12608 + 3.A.1.120.6
pfam Rep_2178_c_4 Rep_2178_c_4_16 12623 12883 + DUF554
pfam Rep_2178_c_4 Rep_2178_c_4_17 12890 13501 - DUF4317
TC Rep_2178_c_4 Rep_2178_c_4_18 13870 15240 + 2.A.66.1.29
pfam Rep_2178_c_4 Rep_2178_c_4_19 15411 16460 + Methyltransf_5
CAZyme Rep_2178_c_4 Rep_2178_c_4_20 16713 19127 + GH94
CAZyme Rep_2178_c_4 Rep_2178_c_4_21 19149 21854 + GH94
TF Rep_2178_c_4 Rep_2178_c_4_22 21935 22675 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) Rep_2178_c_4 Rep_2178_c_4_23 22858 24288 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2178_c_4 Rep_2178_c_4_24 24353 25297 + 3.A.1.1.4
TC Rep_2178_c_4 Rep_2178_c_4_25 25304 26149 + 3.A.1.1.27
Gene ID: Rep_2178_c_4_13
Type: CAZyme
Location: 7279 - 8223 (+)
Gene ID: Rep_2178_c_4_14
Type: pfam
Location: 8268 - 10727 (+)
Gene ID: Rep_2178_c_4_15
Type: TC
Location: 11067 - 12608 (+)
Gene ID: Rep_2178_c_4_16
Type: pfam
Location: 12623 - 12883 (+)
Gene ID: Rep_2178_c_4_17
Type: pfam
Location: 12890 - 13501 (-)
Gene ID: Rep_2178_c_4_18
Type: TC
Location: 13870 - 15240 (+)
Gene ID: Rep_2178_c_4_19
Type: pfam
Location: 15411 - 16460 (+)
Gene ID: Rep_2178_c_4_20
Type: CAZyme
Location: 16713 - 19127 (+)
Gene ID: Rep_2178_c_4_21
Type: CAZyme
Location: 19149 - 21854 (+)
Gene ID: Rep_2178_c_4_22
Type: TF
Location: 21935 - 22675 (-)
Gene ID: Rep_2178_c_4_23
Type:
Location: 22858 - 24288 (+)
Gene ID: Rep_2178_c_4_24
Type: TC
Location: 24353 - 25297 (+)
Gene ID: Rep_2178_c_4_25
Type: TC
Location: 25304 - 26149 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_4_23 vegan > omnivore 1.03409 0.02909

🧭 Explore Read Mapping of CGC

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