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Cluster: Rep_1939_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1939_c_1 Rep_1939_c_1_1846 1958059 1959408 + 2.A.1.3.31
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_1847 1959421 1959849 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1939_c_1 Rep_1939_c_1_1848 1959916 1961316 + AA4
TC Rep_1939_c_1 Rep_1939_c_1_1849 1961391 1962530 - 2.A.1.60.3
TC Rep_1939_c_1 Rep_1939_c_1_1850 1962993 1963817 + 3.A.1.24.1
pfam Rep_1939_c_1 Rep_1939_c_1_1851 1963951 1964619 + RNase_T
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_1852 1964674 1965276 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1939_c_1 Rep_1939_c_1_1853 1965297 1965815 - 2.A.87.3.1
Gene ID: Rep_1939_c_1_1846
Type: TC
Location: 1958059 - 1959408 (+)
Gene ID: Rep_1939_c_1_1847
Type:
Location: 1959421 - 1959849 (+)
Gene ID: Rep_1939_c_1_1848
Type: CAZyme
Location: 1959916 - 1961316 (+)
Gene ID: Rep_1939_c_1_1849
Type: TC
Location: 1961391 - 1962530 (-)
Gene ID: Rep_1939_c_1_1850
Type: TC
Location: 1962993 - 1963817 (+)
Gene ID: Rep_1939_c_1_1851
Type: pfam
Location: 1963951 - 1964619 (+)
Gene ID: Rep_1939_c_1_1852
Type:
Location: 1964674 - 1965276 (+)
Gene ID: Rep_1939_c_1_1853
Type: TC
Location: 1965297 - 1965815 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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