Cluster: Rep_177_CGC21
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: Rep_177
- CGC Family ID: CGCFAM_00109
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1339 | 1604475 | 1606406 | + | GH93 |
| NULL(UNKNOWN) | Rep_177_c_0 | Rep_177_c_0_1340 | 1607268 | 1609070 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_177_c_0 | Rep_177_c_0_1341 | 1609241 | 1612381 | + | 1.B.14.6.1 |
| pfam | Rep_177_c_0 | Rep_177_c_0_1342 | 1612400 | 1614088 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_177_c_0 | Rep_177_c_0_1343 | 1614136 | 1615119 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1344 | 1615152 | 1617083 | + | GH93 |
| TF | Rep_177_c_0 | Rep_177_c_0_1345 | 1617195 | 1621241 | + | HTH_AraC |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1346 | 1621298 | 1623748 | + | GH43_31 |
| STP | Rep_177_c_0 | Rep_177_c_0_1347 | 1624042 | 1626030 | - | PIG-L |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1348 | 1626090 | 1628258 | - | GH92 |
Gene ID: Rep_177_c_0_1339
Type: CAZyme
Location: 1604475 - 1606406 (+)
Type: CAZyme
Location: 1604475 - 1606406 (+)
Gene ID: Rep_177_c_0_1340
Type:
Location: 1607268 - 1609070 (+)
Type:
Location: 1607268 - 1609070 (+)
Gene ID: Rep_177_c_0_1341
Type: TC
Location: 1609241 - 1612381 (+)
Type: TC
Location: 1609241 - 1612381 (+)
Gene ID: Rep_177_c_0_1342
Type: pfam
Location: 1612400 - 1614088 (+)
Type: pfam
Location: 1612400 - 1614088 (+)
Gene ID: Rep_177_c_0_1343
Type:
Location: 1614136 - 1615119 (+)
Type:
Location: 1614136 - 1615119 (+)
Gene ID: Rep_177_c_0_1344
Type: CAZyme
Location: 1615152 - 1617083 (+)
Type: CAZyme
Location: 1615152 - 1617083 (+)
Gene ID: Rep_177_c_0_1345
Type: TF
Location: 1617195 - 1621241 (+)
Type: TF
Location: 1617195 - 1621241 (+)
Gene ID: Rep_177_c_0_1346
Type: CAZyme
Location: 1621298 - 1623748 (+)
Type: CAZyme
Location: 1621298 - 1623748 (+)
Gene ID: Rep_177_c_0_1347
Type: STP
Location: 1624042 - 1626030 (-)
Type: STP
Location: 1624042 - 1626030 (-)
Gene ID: Rep_177_c_0_1348
Type: CAZyme
Location: 1626090 - 1628258 (-)
Type: CAZyme
Location: 1626090 - 1628258 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lascolaii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.