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Cluster: Rep_142_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_142_c_5 Rep_142_c_5_16 14802 16688 + 3.A.3.6.5
NULL(UNKNOWN) Rep_142_c_5 Rep_142_c_5_17 16700 16825 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_142_c_5 Rep_142_c_5_18 16918 17535 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_142_c_5 Rep_142_c_5_19 17621 19612 - CBM26 | GH13_6
NULL(UNKNOWN) Rep_142_c_5 Rep_142_c_5_20 20169 21317 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_142_c_5 Rep_142_c_5_21 21389 23335 + HATPase_c
TC Rep_142_c_5 Rep_142_c_5_22 23369 24949 + 9.B.174.1.1
TC Rep_142_c_5 Rep_142_c_5_23 25106 25810 - 3.A.1.147.8
pfam Rep_142_c_5 Rep_142_c_5_24 25842 27236 - DUF5687
TC Rep_142_c_5 Rep_142_c_5_25 27286 28236 - 2.A.115.1.1
Gene ID: Rep_142_c_5_16
Type: TC
Location: 14802 - 16688 (+)
Gene ID: Rep_142_c_5_17
Type:
Location: 16700 - 16825 (-)
Gene ID: Rep_142_c_5_18
Type:
Location: 16918 - 17535 (+)
Gene ID: Rep_142_c_5_19
Type: CAZyme
Location: 17621 - 19612 (-)
Gene ID: Rep_142_c_5_20
Type:
Location: 20169 - 21317 (+)
Gene ID: Rep_142_c_5_21
Type: STP
Location: 21389 - 23335 (+)
Gene ID: Rep_142_c_5_22
Type: TC
Location: 23369 - 24949 (+)
Gene ID: Rep_142_c_5_23
Type: TC
Location: 25106 - 25810 (-)
Gene ID: Rep_142_c_5_24
Type: pfam
Location: 25842 - 27236 (-)
Gene ID: Rep_142_c_5_25
Type: TC
Location: 27286 - 28236 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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