Cluster: Rep_142_CGC16
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_142
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_142_c_43 | Rep_142_c_43_5 | 7907 | 9337 | + | 2.A.66.2.16 |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_6 | 9334 | 10413 | + | GT2 |
| STP | Rep_142_c_43 | Rep_142_c_43_7 | 10600 | 12420 | + | Aminotran_1_2 |
| pfam | Rep_142_c_43 | Rep_142_c_43_8 | 12478 | 13323 | + | LicD |
| TC | Rep_142_c_43 | Rep_142_c_43_9 | 13414 | 15177 | + | 9.B.97.5.1 |
| pfam | Rep_142_c_43 | Rep_142_c_43_10 | 15247 | 15810 | + | Hexapep |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_11 | 15810 | 16970 | + | GT4 |
| pfam | Rep_142_c_43 | Rep_142_c_43_12 | 16976 | 18124 | + | EpsG |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_13 | 18124 | 18993 | + | GT2 |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_14 | 19001 | 19957 | + | GT8 |
| NULL(UNKNOWN) | Rep_142_c_43 | Rep_142_c_43_15 | 19957 | 21012 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_16 | 21017 | 22117 | + | GT4 |
| pfam | Rep_142_c_43 | Rep_142_c_43_17 | 22745 | 23140 | + | PDDEXK_3 |
| CAZyme | Rep_142_c_43 | Rep_142_c_43_18 | 23629 | 24777 | + | GT4 |
| TC | Rep_142_c_43 | Rep_142_c_43_19 | 24779 | 25387 | + | 9.B.18.1.2 |
Gene ID: Rep_142_c_43_5
Type: TC
Location: 7907 - 9337 (+)
Type: TC
Location: 7907 - 9337 (+)
Gene ID: Rep_142_c_43_6
Type: CAZyme
Location: 9334 - 10413 (+)
Type: CAZyme
Location: 9334 - 10413 (+)
Gene ID: Rep_142_c_43_7
Type: STP
Location: 10600 - 12420 (+)
Type: STP
Location: 10600 - 12420 (+)
Gene ID: Rep_142_c_43_8
Type: pfam
Location: 12478 - 13323 (+)
Type: pfam
Location: 12478 - 13323 (+)
Gene ID: Rep_142_c_43_9
Type: TC
Location: 13414 - 15177 (+)
Type: TC
Location: 13414 - 15177 (+)
Gene ID: Rep_142_c_43_10
Type: pfam
Location: 15247 - 15810 (+)
Type: pfam
Location: 15247 - 15810 (+)
Gene ID: Rep_142_c_43_11
Type: CAZyme
Location: 15810 - 16970 (+)
Type: CAZyme
Location: 15810 - 16970 (+)
Gene ID: Rep_142_c_43_12
Type: pfam
Location: 16976 - 18124 (+)
Type: pfam
Location: 16976 - 18124 (+)
Gene ID: Rep_142_c_43_13
Type: CAZyme
Location: 18124 - 18993 (+)
Type: CAZyme
Location: 18124 - 18993 (+)
Gene ID: Rep_142_c_43_14
Type: CAZyme
Location: 19001 - 19957 (+)
Type: CAZyme
Location: 19001 - 19957 (+)
Gene ID: Rep_142_c_43_15
Type:
Location: 19957 - 21012 (+)
Type:
Location: 19957 - 21012 (+)
Gene ID: Rep_142_c_43_16
Type: CAZyme
Location: 21017 - 22117 (+)
Type: CAZyme
Location: 21017 - 22117 (+)
Gene ID: Rep_142_c_43_17
Type: pfam
Location: 22745 - 23140 (+)
Type: pfam
Location: 22745 - 23140 (+)
Gene ID: Rep_142_c_43_18
Type: CAZyme
Location: 23629 - 24777 (+)
Type: CAZyme
Location: 23629 - 24777 (+)
Gene ID: Rep_142_c_43_19
Type: TC
Location: 24779 - 25387 (+)
Type: TC
Location: 24779 - 25387 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella bivia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.