Cluster: Rep_1398_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1398
- CGC Family ID: CGCFAM_01922
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_4 | Rep_1398_c_4_2 | 363 | 1013 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | Rep_1398_c_4 | Rep_1398_c_4_3 | 1044 | 2246 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1398_c_4 | Rep_1398_c_4_4 | 2398 | 3522 | + | GT4 |
| pfam | Rep_1398_c_4 | Rep_1398_c_4_5 | 3577 | 5007 | + | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | Rep_1398_c_4 | Rep_1398_c_4_6 | 5004 | 6236 | + | GT4 |
| TC | Rep_1398_c_4 | Rep_1398_c_4_7 | 6250 | 7266 | + | 9.B.97.1.3 |
Gene ID: Rep_1398_c_4_2
Type: TC
Location: 363 - 1013 (+)
Type: TC
Location: 363 - 1013 (+)
Gene ID: Rep_1398_c_4_3
Type:
Location: 1044 - 2246 (+)
Type:
Location: 1044 - 2246 (+)
Gene ID: Rep_1398_c_4_4
Type: CAZyme
Location: 2398 - 3522 (+)
Type: CAZyme
Location: 2398 - 3522 (+)
Gene ID: Rep_1398_c_4_5
Type: pfam
Location: 3577 - 5007 (+)
Type: pfam
Location: 3577 - 5007 (+)
Gene ID: Rep_1398_c_4_6
Type: CAZyme
Location: 5004 - 6236 (+)
Type: CAZyme
Location: 5004 - 6236 (+)
Gene ID: Rep_1398_c_4_7
Type: TC
Location: 6250 - 7266 (+)
Type: TC
Location: 6250 - 7266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.