Cluster: Rep_108_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_108_c_9 | Rep_108_c_9_12 | 14479 | 15522 | - | 2.A.4.7.9 |
| NULL(UNKNOWN) | Rep_108_c_9 | Rep_108_c_9_13 | 15501 | 16262 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_108_c_9 | Rep_108_c_9_14 | 16278 | 17678 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | Rep_108_c_9 | Rep_108_c_9_15 | 17665 | 18801 | - | GT28 |
| TC | Rep_108_c_9 | Rep_108_c_9_16 | 18813 | 20219 | - | 2.A.103.1.3 |
Gene ID: Rep_108_c_9_12
Type: TC
Location: 14479 - 15522 (-)
Type: TC
Location: 14479 - 15522 (-)
Gene ID: Rep_108_c_9_13
Type:
Location: 15501 - 16262 (-)
Type:
Location: 15501 - 16262 (-)
Gene ID: Rep_108_c_9_14
Type: pfam
Location: 16278 - 17678 (-)
Type: pfam
Location: 16278 - 17678 (-)
Gene ID: Rep_108_c_9_15
Type: CAZyme
Location: 17665 - 18801 (-)
Type: CAZyme
Location: 17665 - 18801 (-)
Gene ID: Rep_108_c_9_16
Type: TC
Location: 18813 - 20219 (-)
Type: TC
Location: 18813 - 20219 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.