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Cluster: HRGMv2_4800_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4800_8 HRGMv2_4800_8_98 117178 118311 + 3.A.11.1.3
TC HRGMv2_4800_8 HRGMv2_4800_8_99 118355 118948 + 4.F.1.1.7
NULL(UNKNOWN) HRGMv2_4800_8 HRGMv2_4800_8_100 118985 119833 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4800_8 HRGMv2_4800_8_101 119988 123236 - GH2
CAZyme HRGMv2_4800_8 HRGMv2_4800_8_102 123592 125610 + GH13_8
pfam HRGMv2_4800_8 HRGMv2_4800_8_103 125620 126729 - Ala_racemase_C | Ala_racemase_N
TF HRGMv2_4800_8 HRGMv2_4800_8_104 126894 127361 + MarR
TC HRGMv2_4800_8 HRGMv2_4800_8_105 127358 128476 + 2.A.6.2.44
TC HRGMv2_4800_8 HRGMv2_4800_8_106 128541 131693 + 2.A.6.2.16
Gene ID: HRGMv2_4800_8_98
Type: TC
Location: 117178 - 118311 (+)
Gene ID: HRGMv2_4800_8_99
Type: TC
Location: 118355 - 118948 (+)
Gene ID: HRGMv2_4800_8_100
Type:
Location: 118985 - 119833 (-)
Gene ID: HRGMv2_4800_8_101
Type: CAZyme
Location: 119988 - 123236 (-)
Gene ID: HRGMv2_4800_8_102
Type: CAZyme
Location: 123592 - 125610 (+)
Gene ID: HRGMv2_4800_8_103
Type: pfam
Location: 125620 - 126729 (-)
Gene ID: HRGMv2_4800_8_104
Type: TF
Location: 126894 - 127361 (+)
Gene ID: HRGMv2_4800_8_105
Type: TC
Location: 127358 - 128476 (+)
Gene ID: HRGMv2_4800_8_106
Type: TC
Location: 128541 - 131693 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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